About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS06651SUCCINATE/FUMARATE MITOCHONDRIAL TRANSPORTER-RELATED
HS06652CLATHRIN HEAVY CHAIN RELATED
HS06653SH2 DOMAIN CONTAINING PROTEIN
HS06654REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS06655TRYPSIN-RELATED
HS06656IKB KINASE
HS06657VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL
HS06658
HS06659KELCH PROTEIN
HS06660KPL2-RELATED
HS06661EG:EG0003.4 PROTEIN-RELATED
HS06662DYNEIN LIGHT CHAIN
HS06663KELCH REPEAT AND BTB DOMAIN-CONTAINING PROTEIN 13-RELATED
HS06664UNCHARACTERIZED
HS06665DNA POLYMERASE TYPE-X FAMILY MEMBER
HS0666660S RIBOSOMAL PROTEIN L6
HS06667ACETYL-COA C-ACYLTRANSFERASE
HS0666839S RIBOSOMAL PROTEIN L40, MITOCHONDRIAL
HS06669UPF0545 PROTEIN C22ORF39
HS06670UBIQUITIN FUSION DEGRADATON PROTEIN 1
HS06671ATP-DEPENDENT RNA HELICASE
HS06672GLYCOPROTEIN IB BETA
HS06673SEPTIN
HS06674SEPTIN
HS06675CLAUDIN
HS06676CDC45-RELATED PROTEIN
HS06677LIPID PHOSPHATE PHOSPHATASE
HS06678SET DOMAIN PROTEINS
HS06679SET DOMAIN PROTEINS
HS06680LEUCINE ZIPPER-EF-HAND CONTAINING TRANSMEMBRANE PROTEIN
HS06681
HS06682REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS06683
HS06684
HS06685XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER
HS06686CALCIUM BINDING PROTEINS
HS06687HISTONE H2B
HS06688PROLIFERATING CELL NUCLEAR ANTIGEN
HS06689LEUCINE AMINOPEPTIDASE-RELATED
HS06690FUMARYLACETOACETATE HYDROLASE DOMAIN-CONTAINING PROTEIN 2A-RELATED
HS06691GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE
HS06692ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
HS06693
HS06694DUAL SPECIFICITY PROTEIN PHOSPHATASE
HS06695IZUMO SPERM-EGG FUSION PROTEIN 1
HS06696GLYCOSIDASE FAMILY 31
HS06697RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED
HS06698
HS06699
HS06700DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER
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