About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS06551GOLGI PHOSPHOPROTEIN 2/GP73-RELATED
HS06552UNCHARACTERIZED
HS06553SODIUM/DICARBOXYLATE SYMPORTER-RELATED
HS06554ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
HS06555PHOSPHOLIPASE A2 FAMILY MEMBER
HS06556KELCH REPEAT AND BTB DOMAIN-CONTAINING PROTEIN 13-RELATED
HS06557NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATED
HS06558KINETOCHORE PROTEIN NDC80
HS06559GDNF SUBFAMILY OF TGF-BETA FAMILY
HS06560PIKACHURIN-LIKE PROTEIN
HS06561OPSIN
HS06562PDZ AND LIM DOMAIN PROTEIN ZASP
HS06563PROTEIN CBG26694
HS06564NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
HS06565
HS06566BRI3-BINDING PROTEIN
HS06567SPERMATID WD-REPEAT PROTEIN
HS06568GTP-BINDING PROTEIN ALPHA SUBUNIT
HS06569SI:CH211-196P9.1-RELATED
HS06570UNCHARACTERIZED
HS06571BCL-2 RELATED
HS06572NMDA RECEPTOR SYNAPTONUCLEAR SIGNALING AND NEURONAL MIGRATION FACTOR
HS06573REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS06574TETRASPANIN
HS06575VESICULAR MANNOSE-BINDING LECTIN
HS06576T-BOX PROTEIN-RELATED
HS06577BETA-AMYLOID BINDING PROTEIN-RELATED
HS06578SERINE PROTEASE FAMILY S1C HTRA-RELATED
HS06579ZONA PELLUCIDA SPERM-BINDING PROTEIN 3
HS06580NETRIN RECEPTOR UNC5
HS06581REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS06582REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS06583NETRIN RECEPTOR UNC5
HS06584TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 6
HS06585CYTOCHROME B561-RELATED
HS06586LYSYL OXIDASE-LIKE-RELATED
HS06587GOLGI AUTOANTIGEN, GOLGIN SUBFAMILY A, 7
HS06588FRIZZLED
HS06589NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12
HS06590PROTEIN FAM189A
HS06591TIGHT JUNCTION PROTEIN
HS06592FRATAXIN
HS065933-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE
HS06594ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 31-RELATED
HS06595GLYCOSYLTRANSFERASE 14 FAMILY MEMBER
HS06596REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS06597UNCHARACTERIZED
HS06598ZINC FINGER RNA-BINDING PROTEIN
HS06599TRANSCRIPTIONAL REPRESSOR PROTEIN YY
HS06600ZINC FINGER PROTEIN
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