Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8058019.1 | TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN15 |
| CAI8058024.1 | RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN |
| CAI8058023.1 | RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN |
| CAI8058022.1 | |
| CAI8058026.1 | AN1-TYPE ZINC FINGER PROTEIN 4 |
| CAI8058025.1 | |
| CAI8058027.1 | RETICULOCALBIN |
| CAI8058028.1 | RETICULOCALBIN |
| CAI8058030.1 | METHIONINE AMINOPEPTIDASE |
| CAI8058029.1 | METHIONINE AMINOPEPTIDASE |
| CAI8058031.1 | METHIONINE AMINOPEPTIDASE |
| CAI8058032.1 | METHIONINE AMINOPEPTIDASE |
| CAI8058033.1 | METHIONINE AMINOPEPTIDASE |
| CAI8058034.1 | 60S RIBOSOMAL PROTEIN L34 |
| CAI8058037.1 | CENTROSOMAL PROTEIN 2 |
| CAI8058036.1 | SPINDLE ASSEMBLY ABNORMAL PROTEIN 6 HOMOLOG |
| CAI8058035.1 | SPINDLE ASSEMBLY ABNORMAL PROTEIN 6 HOMOLOG |
| CAI8058038.1 | DPY30-RELATED |
| CAI8058039.1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
| CAI8058040.1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
| CAI8058042.1 | SERINE/THREONINE-PROTEIN PHOSPHATASE 2B CATALYTIC SUBUNIT 1-RELATED |
| CAI8058041.1 | SERINE/THREONINE-PROTEIN PHOSPHATASE 2B CATALYTIC SUBUNIT 1-RELATED |
| CAI8058043.1 | SERINE/THREONINE-PROTEIN PHOSPHATASE 2B CATALYTIC SUBUNIT 1-RELATED |
| CAI8058044.1 | GLUTATHIONE S-TRANSFERASE KAPPA |
| CAI8058047.1 | |
| CAI8058046.1 | |
| CAI8058045.1 | |
| CAI8058048.1 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED |
| CAI8058049.1 | |
| CAI8058055.1 | |
| CAI8058056.1 | SCY1-RELATED S/T PROTEIN KINASE-LIKE |
| CAI8058053.1 | SCY1-RELATED S/T PROTEIN KINASE-LIKE |
| CAI8058054.1 | SCY1-RELATED S/T PROTEIN KINASE-LIKE |
| CAI8058052.1 | SCY1-RELATED S/T PROTEIN KINASE-LIKE |
| CAI8058051.1 | SCY1-RELATED S/T PROTEIN KINASE-LIKE |
| CAI8058050.1 | SCY1-RELATED S/T PROTEIN KINASE-LIKE |
| CAI8058057.1 | |
| CAI8058058.1 | PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNIT |
| CAI8058060.1 | NADH-UBIQUINONE OXIDOREDUCTASE 39 KDA SUBUNIT-RELATED |
| CAI8058059.1 | NADH-UBIQUINONE OXIDOREDUCTASE 39 KDA SUBUNIT-RELATED |
| CAI8058061.1 | SKP1 |
| CAI8058062.1 | |
| CAI8058063.1 | |
| CAI8058070.1 | TEL2 INTERACTING PROTEIN 1 TTI1 FAMILY MEMBER |
| CAI8058068.1 | TEL2 INTERACTING PROTEIN 1 TTI1 FAMILY MEMBER |
| CAI8058069.1 | TEL2 INTERACTING PROTEIN 1 TTI1 FAMILY MEMBER |
| CAI8058067.1 | TEL2 INTERACTING PROTEIN 1 TTI1 FAMILY MEMBER |
| CAI8058066.1 | TEL2 INTERACTING PROTEIN 1 TTI1 FAMILY MEMBER |
| CAI8058065.1 | TEL2 INTERACTING PROTEIN 1 TTI1 FAMILY MEMBER |
| CAI8058064.1 | TEL2 INTERACTING PROTEIN 1 TTI1 FAMILY MEMBER |
