Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8057771.1 | SOLUTE CARRIER FAMILY 17 |
| CAI8057773.1 | TRANSLATION INITIATION FACTOR EIF-2B |
| CAI8057772.1 | TRANSLATION INITIATION FACTOR EIF-2B |
| CAI8057774.1 | TRANSLATION INITIATION FACTOR EIF-2B |
| CAI8057775.1 | TRANSLATION INITIATION FACTOR EIF-2B |
| CAI8057777.1 | |
| CAI8057776.1 | |
| CAI8057778.1 | PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED |
| CAI8057780.1 | ACTIN-BINDING LIM PROTEIN |
| CAI8057779.1 | ACTIN-BINDING LIM PROTEIN |
| CAI8057781.1 | CENTROSOMAL PROTEIN 2 |
| CAI8057782.1 | CENTROSOMAL PROTEIN 2 |
| CAI8057783.1 | |
| CAI8057785.1 | ASPARTATE AMINOTRANSFERASE |
| CAI8057784.1 | GLUTAREDOXIN FAMILY MEMBER |
| CAI8057790.1 | NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED |
| CAI8057789.1 | NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED |
| CAI8057787.1 | NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED |
| CAI8057788.1 | NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED |
| CAI8057786.1 | |
| CAI8057791.1 | NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED |
| CAI8057792.1 | NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED |
| CAI8057793.1 | NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED |
| CAI8057794.1 | RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR COMPLEX SUBUNIT |
| CAI8057797.1 | RAB GDP/GTP EXCHANGE FACTOR |
| CAI8057796.1 | RAB GDP/GTP EXCHANGE FACTOR |
| CAI8057795.1 | RAB GDP/GTP EXCHANGE FACTOR |
| CAI8057799.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI8057800.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8057801.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8057798.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI8057802.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8057803.1 | GLYOXALASE FAMILY PROTEIN |
| CAI8057804.1 | |
| CAI8057807.1 | HISTONE DEACETYLASE HDAC1-RELATED |
| CAI8057806.1 | HISTONE DEACETYLASE 2-RELATED |
| CAI8057805.1 | |
| CAI8057809.1 | HISTONE DEACETYLASE HDAC1-RELATED |
| CAI8057808.1 | HISTONE DEACETYLASE 2-RELATED |
| CAI8057810.1 | DNA POLYMERASE EPSILON SUBUNIT B |
| CAI8057813.1 | TUBULIN POLYGLUTAMYLASE |
| CAI8057814.1 | TUBULIN POLYGLUTAMYLASE |
| CAI8057811.1 | |
| CAI8057812.1 | |
| CAI8057815.1 | TUBULIN POLYGLUTAMYLASE |
| CAI8057816.1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
| CAI8057817.1 | RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2 |
| CAI8057818.1 | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED |
| CAI8057819.1 | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED |
| CAI8057820.1 | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED |
