Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8057522.1 | |
| CAI8057521.1 | |
| CAI8057523.1 | |
| CAI8057525.1 | CHROMOBOX PROTEIN |
| CAI8057524.1 | CHROMOBOX PROTEIN |
| CAI8057529.1 | KH DOMAIN CONTAINING RNA BINDING PROTEIN |
| CAI8057528.1 | KH DOMAIN CONTAINING RNA BINDING PROTEIN |
| CAI8057527.1 | KH DOMAIN CONTAINING RNA BINDING PROTEIN |
| CAI8057526.1 | KH DOMAIN CONTAINING RNA BINDING PROTEIN |
| CAI8057530.1 | KH DOMAIN CONTAINING RNA BINDING PROTEIN |
| CAI8057531.1 | KH DOMAIN CONTAINING RNA BINDING PROTEIN |
| CAI8057534.1 | PEROXISOMAL TRANS-2-ENOYL-COA REDUCTASE |
| CAI8057533.1 | PEROXISOMAL TRANS-2-ENOYL-COA REDUCTASE |
| CAI8057532.1 | PEROXISOMAL TRANS-2-ENOYL-COA REDUCTASE |
| CAI8057535.1 | |
| CAI8057537.1 | CHARGED MULTIVESICULAR BODY PROTEIN |
| CAI8057536.1 | CHARGED MULTIVESICULAR BODY PROTEIN |
| CAI8057538.1 | |
| CAI8057539.1 | NGFI-A BINDING PROTEIN |
| CAI8057540.1 | NGFI-A BINDING PROTEIN |
| CAI8057541.1 | CONDENSIN-2 COMPLEX SUBUNIT G2 |
| CAI8057543.1 | SERINE HYDROXYMETHYLTRANSFERASE |
| CAI8057542.1 | SERINE HYDROXYMETHYLTRANSFERASE |
| CAI8057544.1 | SERINE HYDROXYMETHYLTRANSFERASE |
| CAI8057545.1 | CYTOCHROME P450 FAMILY 7 |
| CAI8057548.1 | CENTAURIN/ARF |
| CAI8057550.1 | CENTAURIN/ARF |
| CAI8057549.1 | CENTAURIN-GAMMA-1A |
| CAI8057551.1 | CENTAURIN/ARF |
| CAI8057552.1 | CENTAURIN/ARF |
| CAI8057553.1 | CENTAURIN/ARF |
| CAI8057554.1 | CENTAURIN/ARF |
| CAI8057555.1 | |
| CAI8057547.1 | |
| CAI8057546.1 | |
| CAI8057556.1 | NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN-RELATED |
| CAI8057558.1 | WD40 REPEAT PROTEIN |
| CAI8057557.1 | WD40 REPEAT PROTEIN |
| CAI8057559.1 | RNA POLYMERASE II SUBUNIT A C-TERMINAL DOMAIN PHOSPHATASE |
| CAI8057560.1 | |
| CAI8057561.1 | |
| CAI8057562.1 | SIALIDASE |
| CAI8057565.1 | PROTEIN SIDEKICK |
| CAI8057564.1 | |
| CAI8057563.1 | |
| CAI8057566.1 | EPH RECEPTOR A5 |
| CAI8057567.1 | |
| CAI8057568.1 | 3-HYDROXYISOBUTYRATE DEHYDROGENASE-RELATED |
| CAI8057569.1 | SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 |
| CAI8057570.1 | SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 |
