Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8057221.1 | KETOACID-COENZYME A TRANSFERASE |
| CAI8057222.1 | KETOACID-COENZYME A TRANSFERASE |
| CAI8057223.1 | KETOACID-COENZYME A TRANSFERASE |
| CAI8057224.1 | PQQ ENZYME REPEAT PROTEIN-RELATED |
| CAI8057225.1 | INNER MEMBRANE PROTEIN YGIH |
| CAI8057227.1 | AMINO-ACID AMINOTRANSFERASE |
| CAI8057226.1 | AMINO-ACID AMINOTRANSFERASE |
| CAI8057228.1 | BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASE |
| CAI8057229.1 | |
| CAI8057231.1 | THYMIDYLATE KINASE |
| CAI8057230.1 | THYMIDYLATE KINASE |
| CAI8057233.1 | KINASE-RELATED |
| CAI8057232.1 | KINASE-RELATED |
| CAI8057234.1 | PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNO |
| CAI8057235.1 | PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNZ1-RELATED |
| CAI8057236.1 | DICER-RELATED |
| CAI8057237.1 | |
| CAI8057238.1 | P450, PUTATIVE (EUROFUNG)-RELATED |
| CAI8057239.1 | P450, PUTATIVE (EUROFUNG)-RELATED |
| CAI8057240.1 | P450, PUTATIVE (EUROFUNG)-RELATED |
| CAI8057241.1 | P450, PUTATIVE (EUROFUNG)-RELATED |
| CAI8057242.1 | FERREDOXIN |
| CAI8057243.1 | - |
| CAI8057244.1 | CHORISMATE SYNTHASE |
| CAI8057245.1 | SHIKIMATE DEHYDROGENASE |
| CAI8057246.1 | |
| CAI8057247.1 | VALYL-TRNA SYNTHETASES |
| CAI8057248.1 | |
| CAI8057250.1 | L-ORNITHINE N(5)-MONOOXYGENASE-RELATED |
| CAI8057249.1 | L-ORNITHINE N(5)-MONOOXYGENASE-RELATED |
| CAI8057251.1 | |
| CAI8057252.1 | - |
| CAI8057253.1 | INOSITOL MONOPHOSPHATASE |
| CAI8057254.1 | |
| CAI8057255.1 | TWO-COMPONENT HISTIDINE KINASE |
| CAI8057256.1 | REGULATOR OF RPOS |
| CAI8057257.1 | |
| CAI8057258.1 | LIPOPROTEIN-RELATED |
| CAI8057259.1 | |
| CAI8057260.1 | |
| CAI8057262.1 | |
| CAI8057261.1 | |
| CAI8057263.1 | |
| CAI8057264.1 | |
| CAI8057265.1 | |
| CAI8057266.1 | - |
| CAI8057267.1 | |
| CAI8057268.1 | |
| CAI8057269.1 | |
| CAI8057271.1 |
