Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8056925.1 | MYOTONIC DYSTROPHY S/T KINASE-RELATED |
| CAI8056926.1 | MYOTONIC DYSTROPHY S/T KINASE-RELATED |
| CAI8056927.1 | MYOTONIC DYSTROPHY S/T KINASE-RELATED |
| CAI8056924.1 | |
| CAI8056923.1 | |
| CAI8056922.1 | |
| CAI8056921.1 | |
| CAI8056928.1 | |
| CAI8056929.1 | |
| CAI8056930.1 | ALANYL-TRNA EDITING PROTEIN |
| CAI8056931.1 | 5-OXOPROLINASE RELATED |
| CAI8056932.1 | 5-OXOPROLINASE RELATED |
| CAI8056933.1 | |
| CAI8056934.1 | F420H(2)-DEPENDENT QUINONE REDUCTASE RV1261C |
| CAI8056935.1 | 5-OXOPROLINASE RELATED |
| CAI8056936.1 | |
| CAI8056937.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8056938.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8056939.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8056940.1 | HYDRANTOINASE/DIHYDROPYRIMIDINASE FAMILY MEMBER |
| CAI8056941.1 | CELL SURFACE PROTEIN |
| CAI8056942.1 | DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB-RELATED |
| CAI8056945.1 | LEUCINE DEHYDROGENASE |
| CAI8056944.1 | LEUCINE DEHYDROGENASE |
| CAI8056943.1 | LEUCINE DEHYDROGENASE |
| CAI8056946.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
| CAI8056947.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
| CAI8056948.1 | |
| CAI8056949.1 | SINGLE-STRANDED DNA-BINDING PROTEIN |
| CAI8056950.1 | 30S RIBOSOMAL PROTEIN S18 |
| CAI8056951.1 | |
| CAI8056952.1 | |
| CAI8056953.1 | NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12 |
| CAI8056954.1 | RAN GTPASE-ACTIVATING PROTEIN 1 |
| CAI8056955.1 | |
| CAI8056956.1 | CHEMOKINE C-C MOTIF RECEPTOR 1 |
| CAI8056958.1 | BRG-1 ASSOCIATED FACTOR 250 BAF250 |
| CAI8056957.1 | 60S RIBOSOMAL PROTEIN L24 |
| CAI8056959.1 | BRG-1 ASSOCIATED FACTOR 250 BAF250 |
| CAI8056960.1 | BRG-1 ASSOCIATED FACTOR 250 BAF250 |
| CAI8056961.1 | |
| CAI8056962.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8056963.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8056964.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8056965.1 | |
| CAI8056966.1 | IQ DOMAIN-CONTAINING PROTEIN H |
| CAI8056971.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8056970.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8056972.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8056969.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
