Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8056871.1 | ALKANESULFONATE MONOOXYGENASE |
| CAI8056872.1 | TRNA 5-METHYLAMINOMETHYL-2-THIOURIDYLATE -METHYLTRANSFERASE |
| CAI8056876.1 | TRNA 5-METHYLAMINOMETHYL-2-THIOURIDYLATE -METHYLTRANSFERASE |
| CAI8056873.1 | TRNA 5-METHYLAMINOMETHYL-2-THIOURIDYLATE -METHYLTRANSFERASE |
| CAI8056875.1 | TRNA 5-METHYLAMINOMETHYL-2-THIOURIDYLATE -METHYLTRANSFERASE |
| CAI8056874.1 | TRNA 5-METHYLAMINOMETHYL-2-THIOURIDYLATE -METHYLTRANSFERASE |
| CAI8056877.1 | TRNA 5-METHYLAMINOMETHYL-2-THIOURIDYLATE -METHYLTRANSFERASE |
| CAI8056879.1 | RIBONUCLEASE H2 SUBUNIT A |
| CAI8056878.1 | RIBONUCLEASE H2 SUBUNIT A |
| CAI8056880.1 | ADENINE PHOSPHORIBOSYLTRANSFERASE |
| CAI8056881.1 | |
| CAI8056882.1 | ZINC METALLOPROTEASE MJ0611-RELATED |
| CAI8056883.1 | ZINC METALLOPROTEASE MJ0611-RELATED |
| CAI8056884.1 | SULFUR CARRIER PROTEIN SLR0821-RELATED |
| CAI8056885.1 | METHYLMALONYL-COA MUTASE, MITOCHONDRIAL-RELATED |
| CAI8056886.1 | METHYLMALONYL-COA MUTASE, MITOCHONDRIAL-RELATED |
| CAI8056887.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8056888.1 | TETRATRICOPEPTIDE REPEAT PROTEIN 38 |
| CAI8056889.1 | |
| CAI8056891.1 | MALATE SYNTHASE |
| CAI8056890.1 | MALATE SYNTHASE |
| CAI8056892.1 | FAD-BINDING, PUTATIVE (AFU_ORTHOLOGUE AFUA_6G07600)-RELATED |
| CAI8056893.1 | |
| CAI8056894.1 | SECRETED GLYCOSYL HYDROLASE |
| CAI8056895.1 | 5'-NUCLEOTIDASE-RELATED |
| CAI8056896.1 | SUCCINYL-COA--D-CITRAMALATE COA-TRANSFERASE |
| CAI8056897.1 | SULFOPYRUVATE DECARBOXYLASE SUBUNIT ALPHA |
| CAI8056898.1 | BLR3430 PROTEIN |
| CAI8056899.1 | LEUCINE DEHYDROGENASE |
| CAI8056900.1 | LEUCINE DEHYDROGENASE |
| CAI8056901.1 | LEUCINE DEHYDROGENASE |
| CAI8056902.1 | |
| CAI8056903.1 | |
| CAI8056904.1 | OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC |
| CAI8056905.1 | DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB-RELATED |
| CAI8056906.1 | OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC |
| CAI8056907.1 | DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB-RELATED |
| CAI8056908.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8056909.1 | |
| CAI8056912.1 | |
| CAI8056911.1 | |
| CAI8056910.1 | |
| CAI8056913.1 | PROTEASOME SUBUNIT ALPHA/BETA |
| CAI8056914.1 | PROTEASOME SUBUNIT ALPHA/BETA |
| CAI8056917.1 | PROTEASOME SUBUNIT ALPHA/BETA |
| CAI8056915.1 | PROTEASOME SUBUNIT ALPHA/BETA |
| CAI8056918.1 | PROTEASOME SUBUNIT ALPHA/BETA |
| CAI8056919.1 | PROTEASOME SUBUNIT ALPHA/BETA |
| CAI8056916.1 | PROTEASOME SUBUNIT ALPHA/BETA |
| CAI8056920.1 |
