About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8021051.1METAL TRANSPORT SYSTEM ATP-BINDING PROTEIN TM_0124-RELATED
CAI8021052.1ANKYRIN REPEAT CONTAINING
CAI8021053.1GLYCOLATE OXIDASE SUBUNIT GLCD
CAI8021054.1D-LACTATE DEHYDROGENASE
CAI8021055.1GLYCOLATE OXIDASE IRON-SULFUR SUBUNIT
CAI8021057.1AMINOTRANSFERASE CLASS V
CAI8021056.1AMINOTRANSFERASE CLASS V
CAI8021059.1TRYPTOPHAN SYNTHASE-RELATED
CAI8021058.1TRYPTOPHAN SYNTHASE-RELATED
CAI8021060.1N-(5'-PHOSPHORIBOSYL)ANTHRANILATE ISOMERASE
CAI8021061.1TRYPTOPHAN BIOSYNTHESIS PROTEIN
CAI8021065.1ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE
CAI8021064.1ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE
CAI8021063.1ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE
CAI8021062.1ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE
CAI8021066.1PROTEASE FAMILY S9A OLIGOPEPTIDASE
CAI8021067.1-
CAI8021068.1SIGNAL TRANSDUCTION PROTEIN TRAP
CAI8021069.1METAL-SULFUR CLUSTER BIOSYNTHESIS PROTEINS YUAD-RELATED
CAI8021070.1BAX INHIBITOR-RELATED
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