Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8056321.1 | |
| CAI8056322.1 | |
| CAI8056323.1 | |
| CAI8056324.1 | MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE |
| CAI8056325.1 | |
| CAI8056326.1 | |
| CAI8056327.1 | |
| CAI8056328.1 | ABC TRANSPORTER ATP-BINDING PROTEIN ALBC-RELATED |
| CAI8056329.1 | OS03G0844900 PROTEIN |
| CAI8056330.1 | ATP-DEPENDENT CLP PROTEASE |
| CAI8056331.1 | DNA REPAIR PROTEIN RADA |
| CAI8056332.1 | EXSB FAMILY PROTEIN |
| CAI8056333.1 | |
| CAI8056334.1 | GRPE PROTEIN |
| CAI8056335.1 | GRPE PROTEIN |
| CAI8056336.1 | GRPE PROTEIN |
| CAI8056337.1 | HEAT SHOCK PROTEIN 70KDA |
| CAI8056338.1 | HEAT SHOCK PROTEIN 70KDA |
| CAI8056339.1 | PEPTIDASE S12 |
| CAI8056340.1 | REGULATOR OF RPOS |
| CAI8056341.1 | REGULATOR OF RPOS |
| CAI8056342.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
| CAI8056343.1 | |
| CAI8056344.1 | |
| CAI8056345.1 | ENOYL-COA HYDRATASE-RELATED |
| CAI8056346.1 | ENOYL-COA HYDRATASE |
| CAI8056347.1 | - |
| CAI8056348.1 | |
| CAI8056349.1 | COBW-RELATED |
| CAI8056350.1 | |
| CAI8056351.1 | MAGNESIUM-CHELATASE SUBUNIT CHLH, CHLOROPLASTIC |
| CAI8056352.1 | CORRINOID ADENOSYLTRANSFERASE |
| CAI8056353.1 | DETHIOBIOTIN SYNTHETASE |
| CAI8056354.1 | COBALAMIN BIOSYNTHESIS PROTEIN CBIB |
| CAI8056355.1 | SIROHYDROCHLORIN FERROCHELATASE, CHLOROPLASTIC |
| CAI8056356.1 | COBALT-PRECORRIN-8 METHYLMUTASE |
| CAI8056357.1 | COBALT-PRECORRIN-6B C(15)-METHYLTRANSFERASE (DECARBOXYLATING) |
| CAI8056358.1 | COBALT-FACTOR III C(17)-METHYLTRANSFERASE-RELATED |
| CAI8056359.1 | SIROHEME SYNTHASE-RELATED |
| CAI8056360.1 | COBALT-PRECORRIN-6A REDUCTASE |
| CAI8056361.1 | |
| CAI8056362.1 | COBALT-PRECORRIN-5B C(1)-METHYLTRANSFERASE |
| CAI8056363.1 | SIROHEME SYNTHASE-RELATED |
| CAI8056364.1 | ELECTRON TRANSPORT PROTIN SCO1/SENC FAMILY MEMBER |
| CAI8056365.1 | COBYRINATE A,C-DIAMIDE SYNTHASE |
| CAI8056367.1 | BINDING PROTEIN TRANSPEPTIDASE, PUTATIVE-RELATED |
| CAI8056366.1 | BINDING PROTEIN TRANSPEPTIDASE, PUTATIVE-RELATED |
| CAI8056371.1 | DNA GYRASE/TOPOISOMERASE SUBUNIT B |
| CAI8056369.1 | DNA GYRASE/TOPOISOMERASE SUBUNIT B |
| CAI8056370.1 | DNA GYRASE/TOPOISOMERASE SUBUNIT B |
