Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8056068.1 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED |
| CAI8056072.1 | |
| CAI8056073.1 | |
| CAI8056074.1 | RNA POLYMERASE ECF-TYPE SIGMA FACTO |
| CAI8056075.1 | CYSTEINYL-TRNA SYNTHETASE |
| CAI8056076.1 | NUCLEAR EXPORT MEDIATOR FACTOR NEMF |
| CAI8056077.1 | UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE |
| CAI8056078.1 | |
| CAI8056079.1 | LIPID II:GLYCINE GLYCYLTRANSFERASE |
| CAI8056081.1 | DEAD/H BOX POLYPEPTIDE 26/DICE1-RELATED |
| CAI8056080.1 | DEAD/H BOX POLYPEPTIDE 26/DICE1-RELATED |
| CAI8056082.1 | METALLOPHOSPHOESTERASE |
| CAI8056084.1 | METALLOPHOSPHOESTERASE |
| CAI8056083.1 | METALLOPHOSPHOESTERASE |
| CAI8056085.1 | METALLOPHOSPHOESTERASE |
| CAI8056086.1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 12 |
| CAI8056087.1 | |
| CAI8056088.1 | UNC80 |
| CAI8056090.1 | |
| CAI8056089.1 | |
| CAI8056091.1 | |
| CAI8056092.1 | |
| CAI8056093.1 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED |
| CAI8056094.1 | |
| CAI8056099.1 | CENTROMERE PROTEIN E |
| CAI8056098.1 | KINESIN-RELATED |
| CAI8056097.1 | |
| CAI8056095.1 | |
| CAI8056096.1 | |
| CAI8056100.1 | CENTROMERE PROTEIN E |
| CAI8056101.1 | HCG1796489 |
| CAI8056102.1 | |
| CAI8056103.1 | |
| CAI8056105.1 | - |
| CAI8056104.1 | - |
| CAI8056107.1 | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD |
| CAI8056106.1 | |
| CAI8056108.1 | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD |
| CAI8056109.1 | |
| CAI8056111.1 | TETRASPANIN |
| CAI8056110.1 | TETRASPANIN |
| CAI8056112.1 | TETRASPANIN |
| CAI8056113.1 | |
| CAI8056114.1 | |
| CAI8056115.1 | |
| CAI8056116.1 | |
| CAI8056117.1 | |
| CAI8056118.1 | ROLLING PEBBLES, ISOFORM B |
| CAI8056119.1 | ANKYRIN REPEAT FAMILY PROTEIN |
| CAI8056120.1 | DNA POLYMERASE I |
