Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8055920.1 | 40S RIBOSOMAL PROTEIN S26 |
| CAI8055928.1 | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN |
| CAI8055929.1 | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN |
| CAI8055926.1 | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN |
| CAI8055925.1 | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN |
| CAI8055924.1 | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN |
| CAI8055923.1 | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN |
| CAI8055922.1 | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN |
| CAI8055930.1 | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN |
| CAI8055927.1 | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN |
| CAI8055933.1 | NEUROPATHY TARGET ESTERASE/SWISS CHEESE D.MELANOGASTER |
| CAI8055932.1 | NEUROPATHY TARGET ESTERASE/SWISS CHEESE D.MELANOGASTER |
| CAI8055931.1 | NEUROPATHY TARGET ESTERASE/SWISS CHEESE D.MELANOGASTER |
| CAI8055934.1 | |
| CAI8055935.1 | NEUROPATHY TARGET ESTERASE/SWISS CHEESE D.MELANOGASTER |
| CAI8055936.1 | AP COMPLEX SUBUNIT MU |
| CAI8055937.1 | AP COMPLEX SUBUNIT MU |
| CAI8055939.1 | KH DOMAIN CONTAINING RNA BINDING PROTEIN |
| CAI8055938.1 | KH DOMAIN CONTAINING RNA BINDING PROTEIN |
| CAI8055941.1 | KH DOMAIN CONTAINING RNA BINDING PROTEIN |
| CAI8055940.1 | KH DOMAIN CONTAINING RNA BINDING PROTEIN |
| CAI8055942.1 | ACTIN |
| CAI8055943.1 | EXOSOME COMPLEX COMPONENT |
| CAI8055944.1 | CALICYLIN BINDING PROTEIN |
| CAI8055945.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8055946.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8055947.1 | PHOSPHOLIPASE A-2-ACTIVATING PROTEIN |
| CAI8055948.1 | |
| CAI8055949.1 | |
| CAI8055950.1 | |
| CAI8055951.1 | RIBONUCLEASE |
| CAI8055952.1 | PROTEIN BRICK1 |
| CAI8055957.1 | ATP-DEPENDENT RNA AND DNA HELICASE |
| CAI8055956.1 | ATP-DEPENDENT RNA AND DNA HELICASE |
| CAI8055955.1 | ATP-DEPENDENT RNA AND DNA HELICASE |
| CAI8055954.1 | ATP-DEPENDENT RNA AND DNA HELICASE |
| CAI8055953.1 | ATP-DEPENDENT RNA AND DNA HELICASE |
| CAI8055958.1 | ATP-DEPENDENT RNA AND DNA HELICASE |
| CAI8055959.1 | ATP-DEPENDENT RNA AND DNA HELICASE |
| CAI8055960.1 | |
| CAI8055966.1 | CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED |
| CAI8055965.1 | CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED |
| CAI8055968.1 | CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED |
| CAI8055964.1 | |
| CAI8055963.1 | |
| CAI8055962.1 | |
| CAI8055961.1 | |
| CAI8055967.1 | CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED |
| CAI8055969.1 | CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED |
| CAI8055970.1 | CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED |
