Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8055671.1 | SD08549P |
| CAI8055672.1 | |
| CAI8055673.1 | STROMAL CELL-DERIVED FACTOR 2-LIKE PROTEIN |
| CAI8055675.1 | PROTEIN DISULFIDE-ISOMERASE A6 |
| CAI8055674.1 | PROTEIN DISULFIDE-ISOMERASE A6 |
| CAI8055677.1 | PROTEIN DISULFIDE-ISOMERASE A6 |
| CAI8055676.1 | PROTEIN DISULFIDE-ISOMERASE A6 |
| CAI8055679.1 | METHIONYL-TRNA SYNTHETASE |
| CAI8055678.1 | METHIONYL-TRNA SYNTHETASE |
| CAI8055682.1 | METHIONYL-TRNA SYNTHETASE |
| CAI8055681.1 | METHIONYL-TRNA SYNTHETASE |
| CAI8055680.1 | METHIONYL-TRNA SYNTHETASE |
| CAI8055683.1 | RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN |
| CAI8055684.1 | |
| CAI8055685.1 | |
| CAI8055688.1 | GAMMA GLUTAMYL TRANSPEPTIDASE |
| CAI8055689.1 | GAMMA GLUTAMYL TRANSPEPTIDASE |
| CAI8055687.1 | GAMMA GLUTAMYL TRANSPEPTIDASE |
| CAI8055686.1 | GAMMA GLUTAMYL TRANSPEPTIDASE |
| CAI8055694.1 | RIBOPHORIN II |
| CAI8055693.1 | RIBOPHORIN II |
| CAI8055696.1 | RIBOPHORIN II |
| CAI8055695.1 | RIBOPHORIN II |
| CAI8055692.1 | RIBOPHORIN II |
| CAI8055691.1 | RIBOPHORIN II |
| CAI8055690.1 | RIBOPHORIN II |
| CAI8055697.1 | RIBOPHORIN II |
| CAI8055698.1 | RIBOPHORIN II |
| CAI8055699.1 | RIBOPHORIN II |
| CAI8055701.1 | RNA (RNA) POLYMERASE II ASSOCIATED PROTEIN HOMOLOG |
| CAI8055700.1 | RNA (RNA) POLYMERASE II ASSOCIATED PROTEIN HOMOLOG |
| CAI8055702.1 | RNA (RNA) POLYMERASE II ASSOCIATED PROTEIN HOMOLOG |
| CAI8055703.1 | RNA (RNA) POLYMERASE II ASSOCIATED PROTEIN HOMOLOG |
| CAI8055704.1 | UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN |
| CAI8055705.1 | |
| CAI8055706.1 | IRON-SULFUR CLUSTER ASSEMBLY ENZYME NIFU HOMOLOG |
| CAI8055707.1 | D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_1G13630) |
| CAI8055708.1 | GLYCOSYLTRANSFERASE |
| CAI8055709.1 | GLYCOSYLTRANSFERASE |
| CAI8055710.1 | |
| CAI8055711.1 | |
| CAI8055712.1 | |
| CAI8055713.1 | |
| CAI8055714.1 | |
| CAI8055715.1 | |
| CAI8055716.1 | |
| CAI8055717.1 | ALDEHYDE DEHYDROGENASE-RELATED |
| CAI8055718.1 | ALDEHYDE DEHYDROGENASE-RELATED |
| CAI8055719.1 | ALDEHYDE DEHYDROGENASE-RELATED |
| CAI8055720.1 |
