Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8055371.1 | |
| CAI8055372.1 | SMALL NUCLEAR RIBONUCLEOPROTEIN |
| CAI8055373.1 | |
| CAI8055374.1 | PROTEIN LYSINE HYDROXYLATION COMPLEX COMPONENT |
| CAI8055375.1 | |
| CAI8055376.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI8055377.1 | |
| CAI8055378.1 | |
| CAI8055379.1 | |
| CAI8055380.1 | |
| CAI8055381.1 | |
| CAI8055382.1 | |
| CAI8055383.1 | |
| CAI8055384.1 | |
| CAI8055385.1 | STEROL DESATURASE |
| CAI8055386.1 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
| CAI8055387.1 | ALDEHYDE OXIDOREDUCTASE MOLYBDENUM COFACTOR ASSEMBLY PROTEIN |
| CAI8055388.1 | |
| CAI8055389.1 | XANTHINE DEHYDROGENASE SUBUNIT C-RELATED |
| CAI8055393.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8055392.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8055390.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8055391.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8055394.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI8055395.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8055396.1 | ENDORIBONUCLEASE-RELATED |
| CAI8055397.1 | UNCHARACTERIZED |
| CAI8055398.1 | GAMMA-GLUTAMYLTRANSPEPTIDASE (AFU_ORTHOLOGUE AFUA_4G13580) |
| CAI8055399.1 | GAMMA-GLUTAMYLTRANSPEPTIDASE (AFU_ORTHOLOGUE AFUA_4G13580) |
| CAI8055400.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8055403.1 | DNA REPAIR PROTEIN RADC |
| CAI8055402.1 | DNA REPAIR PROTEIN RADC |
| CAI8055401.1 | DNA REPAIR PROTEIN RADC |
| CAI8055404.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8055405.1 | PBS LYASE HEAT-LIKE PROTEIN |
| CAI8055406.1 | ATP-DEPENDENT (S)-NAD(P)H-HYDRATE DEHYDRATASE FAMILY MEMBER |
| CAI8055407.1 | |
| CAI8055408.1 | METHYLENETETRAHYDROFOLATE REDUCTASE |
| CAI8055409.1 | |
| CAI8055410.1 | |
| CAI8055411.1 | |
| CAI8055414.1 | CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 19 |
| CAI8055413.1 | CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 19 |
| CAI8055412.1 | NEPHRIN |
| CAI8055415.1 | |
| CAI8055416.1 | |
| CAI8055418.1 | 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 2 |
| CAI8055419.1 | 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 2 |
| CAI8055417.1 | 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 2 |
| CAI8055420.1 | 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 2 |
