Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8055321.1 | GTP CYCLOHYDROLASE I |
| CAI8055322.1 | GTP CYCLOHYDROLASE I |
| CAI8055323.1 | GTP CYCLOHYDROLASE I |
| CAI8055324.1 | GTP CYCLOHYDROLASE I |
| CAI8055325.1 | GTP CYCLOHYDROLASE I |
| CAI8055326.1 | GTP CYCLOHYDROLASE I |
| CAI8055327.1 | TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKG-RELATED |
| CAI8055328.1 | TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKG-RELATED |
| CAI8055329.1 | SHORT-CHAIN DEHYDROGENASE REDUCTASE |
| CAI8055330.1 | 2-HYDROXYACID DEHYDROGENASE-RELATED |
| CAI8055331.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI8055332.1 | N-ACETYLMURAMOYL-L-ALANINE AMIDASE AMID |
| CAI8055333.1 | TRANSCRIPTIONAL REGULATOR MRAZ |
| CAI8055334.1 | CARBOHYDRATE SULFOTRANSFERASE |
| CAI8055335.1 | CARBOHYDRATE SULFOTRANSFERASE |
| CAI8055336.1 | CARBOHYDRATE SULFOTRANSFERASE |
| CAI8055338.1 | |
| CAI8055337.1 | |
| CAI8055339.1 | |
| CAI8055340.1 | CYSTEINE-RICH PROTEIN CRIP FAMILY MEMBER |
| CAI8055344.1 | TATA BOX-BINDING PROTEIN ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT A |
| CAI8055343.1 | TATA BOX-BINDING PROTEIN ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT A |
| CAI8055342.1 | |
| CAI8055341.1 | |
| CAI8055345.1 | TATA BOX-BINDING PROTEIN ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT A |
| CAI8055346.1 | |
| CAI8055347.1 | |
| CAI8055348.1 | |
| CAI8055350.1 | |
| CAI8055349.1 | |
| CAI8055351.1 | |
| CAI8055352.1 | |
| CAI8055353.1 | |
| CAI8055355.1 | |
| CAI8055354.1 | |
| CAI8055356.1 | |
| CAI8055358.1 | CYTOKINE RECEPTOR |
| CAI8055357.1 | CYTOKINE RECEPTOR |
| CAI8055359.1 | |
| CAI8055360.1 | |
| CAI8055362.1 | ANAPHASE-PROMOTING COMPLEX SUBUNIT 2 |
| CAI8055361.1 | |
| CAI8055363.1 | |
| CAI8055364.1 | |
| CAI8055369.1 | AMP DEAMINASE |
| CAI8055368.1 | AMP DEAMINASE |
| CAI8055367.1 | AMP DEAMINASE |
| CAI8055366.1 | AMP DEAMINASE |
| CAI8055365.1 | AMP DEAMINASE |
| CAI8055370.1 |
