Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8055221.1 | |
| CAI8055222.1 | |
| CAI8055223.1 | TRANSAMIDASE |
| CAI8055224.1 | ALANYL-TRNA EDITING PROTEIN |
| CAI8055225.1 | PHOSPHOLIPID SCRAMBLASE-RELATED |
| CAI8055226.1 | PHOSPHOGLYCOLATE PHOSPHATASE |
| CAI8055227.1 | SARCOSINE DEHYDROGENASE-RELATED |
| CAI8055228.1 | AMINOMETHYLTRANSFERASE |
| CAI8055229.1 | AMINOMETHYLTRANSFERASE |
| CAI8055230.1 | |
| CAI8055231.1 | DIAMINOPIMELATE DECARBOXYLASE |
| CAI8055232.1 | FATTY-ACID AMIDE HYDROLASE |
| CAI8055233.1 | FATTY-ACID AMIDE HYDROLASE |
| CAI8055234.1 | |
| CAI8055235.1 | ASPARTATE AMINOTRANSFERASE YHDR-RELATED |
| CAI8055236.1 | TRANSPOSASE INSH FOR INSERTION SEQUENCE ELEMENT IS5A-RELATED |
| CAI8055237.1 | TRANSPOSASE INSH FOR INSERTION SEQUENCE ELEMENT IS5A-RELATED |
| CAI8055238.1 | |
| CAI8055239.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8055240.1 | - |
| CAI8055241.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8055242.1 | ACETOLACTATE SYNTHASE SMALL SUBUNIT |
| CAI8055243.1 | KETOL-ACID REDUCTOISOMERASE, MITOCHONDRIAL |
| CAI8055244.1 | HOMOCITRATE SYNTHASE-RELATED |
| CAI8055245.1 | CELL SHAPE-DETERMINING PROTEIN MREB |
| CAI8055246.1 | CELL CYCLE PROTEIN |
| CAI8055247.1 | AMINO-ACID AMINOTRANSFERASE |
| CAI8055248.1 | |
| CAI8055251.1 | PHOSPHOGLYCERATE KINASE |
| CAI8055250.1 | PHOSPHOGLYCERATE KINASE |
| CAI8055249.1 | PHOSPHOGLYCERATE KINASE |
| CAI8055255.1 | PHOSPHOGLYCERATE KINASE |
| CAI8055253.1 | PHOSPHOGLYCERATE KINASE |
| CAI8055252.1 | PHOSPHOGLYCERATE KINASE |
| CAI8055254.1 | PHOSPHOGLYCERATE KINASE |
| CAI8055256.1 | GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2 |
| CAI8055257.1 | TRANSKETOLASE |
| CAI8055258.1 | |
| CAI8055259.1 | 3-DEOXY-MANNO-OCTULOSONATE CYTIDYLYLTRANSFERASE |
| CAI8055260.1 | CYTOCHROME C |
| CAI8055261.1 | HYDROLASE |
| CAI8055262.1 | |
| CAI8055263.1 | NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING |
| CAI8055264.1 | RIBULOSE-5-PHOSPHATE-3-EPIMERASE |
| CAI8055265.1 | COLD SHOCK DOMAIN CONTAINING PROTEINS |
| CAI8055267.1 | ENDONUCLEASE V |
| CAI8055266.1 | ENDONUCLEASE V |
| CAI8055268.1 | ENDONUCLEASE V |
| CAI8055269.1 | - |
| CAI8055270.1 | ACETOIN CATABOLISM PROTEIN X |
