Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8055121.1 | DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL |
| CAI8055122.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI8055123.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI8055124.1 | NADH-QUINONE OXIDOREDUCTASE SUBUNIT F |
| CAI8055125.1 | GLUTATHIONE S-TRANSFERASE KAPPA |
| CAI8055126.1 | |
| CAI8055127.1 | |
| CAI8055128.1 | |
| CAI8055129.1 | |
| CAI8055130.1 | |
| CAI8055131.1 | |
| CAI8055133.1 | |
| CAI8055132.1 | |
| CAI8055134.1 | |
| CAI8055135.1 | DIOXYGENASE RV0097-RELATED |
| CAI8055140.1 | LEUCYL-TRNA SYNTHETASE |
| CAI8055139.1 | LEUCYL-TRNA SYNTHETASE |
| CAI8055137.1 | LEUCYL-TRNA SYNTHETASE |
| CAI8055138.1 | LEUCYL-TRNA SYNTHETASE |
| CAI8055136.1 | LEUCYL-TRNA SYNTHETASE |
| CAI8055141.1 | LEUCYL-TRNA SYNTHETASE |
| CAI8055142.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| CAI8055143.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| CAI8055144.1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8055145.1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8055146.1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8055147.1 | |
| CAI8055148.1 | |
| CAI8055149.1 | |
| CAI8055150.1 | |
| CAI8055151.1 | |
| CAI8055152.1 | |
| CAI8055153.1 | |
| CAI8055154.1 | F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED |
| CAI8055155.1 | HOMEOBOX PROTEIN SIX |
| CAI8055156.1 | |
| CAI8055157.1 | SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN |
| CAI8055158.1 | CYTOKINE RECEPTOR |
| CAI8055159.1 | SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN |
| CAI8055161.1 | PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED |
| CAI8055160.1 | PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED |
| CAI8055162.1 | PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED |
| CAI8055163.1 | PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED |
| CAI8055164.1 | |
| CAI8055168.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8055169.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8055167.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8055166.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8055165.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8055170.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
