Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8054871.1 | CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 1 |
| CAI8054872.1 | CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 1 |
| CAI8054873.1 | |
| CAI8054874.1 | |
| CAI8054875.1 | |
| CAI8054876.1 | |
| CAI8054877.1 | |
| CAI8054878.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8054880.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8054885.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8054884.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8054883.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8054882.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8054881.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8054879.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8054886.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8054887.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8054888.1 | |
| CAI8054889.1 | |
| CAI8054890.1 | |
| CAI8054891.1 | |
| CAI8054892.1 | |
| CAI8054893.1 | |
| CAI8054896.1 | TTC17 PROTEIN |
| CAI8054895.1 | TTC17 PROTEIN |
| CAI8054894.1 | |
| CAI8054897.1 | TTC17 PROTEIN |
| CAI8054898.1 | |
| CAI8054900.1 | RNA POLYMERASE SIGMA FACTOR RPO |
| CAI8054899.1 | RNA POLYMERASE SIGMA FACTOR RPO |
| CAI8054901.1 | ALKANESULFONATE MONOOXYGENASE-RELATED |
| CAI8054902.1 | ALKANESULFONATE MONOOXYGENASE-RELATED |
| CAI8054903.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8054904.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8054905.1 | |
| CAI8054906.1 | |
| CAI8054907.1 | TRANSPOSASE RV3428C-RELATED |
| CAI8054908.1 | DEOXYRIBODIPYRIMIDINE PHOTOLYASE |
| CAI8054910.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8054909.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8054911.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8054912.1 | |
| CAI8054913.1 | |
| CAI8054914.1 | |
| CAI8054915.1 | |
| CAI8054916.1 | |
| CAI8054917.1 | |
| CAI8054918.1 | |
| CAI8054919.1 | |
| CAI8054920.1 |
