Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8054670.1 | 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER |
| CAI8054673.1 | 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER |
| CAI8054671.1 | 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER |
| CAI8054674.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8054675.1 | XAA-PRO AMINOPEPTIDASE 1 |
| CAI8054676.1 | NUCLEAR FACTOR ERYTHROID 2-RELATED FACTOR |
| CAI8054677.1 | SEC61 GAMMA SUBUNIT |
| CAI8054678.1 | |
| CAI8054679.1 | STEROL DESATURASE-RELATED PROTEIN |
| CAI8054680.1 | STEROL DESATURASE-RELATED PROTEIN |
| CAI8054681.1 | STEROL DESATURASE-RELATED PROTEIN |
| CAI8054682.1 | STEROL DESATURASE-RELATED PROTEIN |
| CAI8054683.1 | STEROL DESATURASE-RELATED PROTEIN |
| CAI8054684.1 | MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN |
| CAI8054685.1 | NUCLEAR FACTOR ERYTHROID 2-RELATED FACTOR |
| CAI8054687.1 | ZETA-COAT PROTEIN |
| CAI8054686.1 | ZETA-COAT PROTEIN |
| CAI8054688.1 | |
| CAI8054691.1 | SWI/SNF COMPLEX-RELATED |
| CAI8054692.1 | SWI/SNF COMPLEX-RELATED |
| CAI8054693.1 | SWI/SNF COMPLEX-RELATED |
| CAI8054690.1 | SWI/SNF COMPLEX-RELATED |
| CAI8054689.1 | SWI/SNF COMPLEX-RELATED |
| CAI8054695.1 | SWI/SNF COMPLEX-RELATED |
| CAI8054694.1 | SWI/SNF COMPLEX-RELATED |
| CAI8054696.1 | 3-HYDROXYISOBUTYRATE DEHYDROGENASE-RELATED |
| CAI8054700.1 | FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED |
| CAI8054699.1 | FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED |
| CAI8054698.1 | FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED |
| CAI8054697.1 | |
| CAI8054702.1 | MASK PROTEIN |
| CAI8054703.1 | |
| CAI8054701.1 | |
| CAI8054704.1 | |
| CAI8054705.1 | UNCHARACTERIZED |
| CAI8054707.1 | ATAXIN-7-LIKE PROTEIN 3 |
| CAI8054706.1 | ATAXIN-7-LIKE PROTEIN 3 |
| CAI8054708.1 | ATAXIN-7-LIKE PROTEIN 3 |
| CAI8054709.1 | MYOSIN LIGHT CHAIN 1, 3 |
| CAI8054710.1 | (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME |
| CAI8054711.1 | X-BOX BINDING PROTEIN 1 |
| CAI8054714.1 | |
| CAI8054713.1 | TETRASPANIN |
| CAI8054712.1 | |
| CAI8054715.1 | SPECKLE-TYPE POZ PROTEIN |
| CAI8054716.1 | TROPONIN C-AKIN-1 PROTEIN |
| CAI8054717.1 | UNCHARACTERIZED |
| CAI8054718.1 | IOJAP SUPERFAMILY ORTHOLOG |
| CAI8054720.1 | UNCHARACTERIZED |
| CAI8054719.1 | UNCHARACTERIZED |
