Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8054472.1 | DNA POLYMERASE CATALYTIC SUBUNIT |
| CAI8054473.1 | DNA POLYMERASE CATALYTIC SUBUNIT |
| CAI8054474.1 | DNA POLYMERASE CATALYTIC SUBUNIT |
| CAI8054462.1 | |
| CAI8054475.1 | |
| CAI8054476.1 | |
| CAI8054477.1 | 40S RIBOSOMAL PROTEIN S10 |
| CAI8054478.1 | 40S RIBOSOMAL PROTEIN S10 |
| CAI8054479.1 | |
| CAI8054480.1 | FI01416P |
| CAI8054481.1 | GROWTH HORMONE-INDUCIBLE SOLUBLE PROTEIN-RELATED |
| CAI8054482.1 | |
| CAI8054485.1 | THYMIDYLATE SYNTHASE 1 |
| CAI8054484.1 | THYMIDYLATE SYNTHASE 1 |
| CAI8054483.1 | THYMIDYLATE SYNTHASE 1 |
| CAI8054486.1 | THYMIDYLATE SYNTHASE 1 |
| CAI8054487.1 | THYMIDYLATE SYNTHASE 1 |
| CAI8054488.1 | THYMIDYLATE SYNTHASE 1 |
| CAI8054489.1 | |
| CAI8054490.1 | RRP15-LIKE PROTEIN |
| CAI8054491.1 | |
| CAI8054492.1 | |
| CAI8054493.1 | |
| CAI8054494.1 | |
| CAI8054496.1 | IMPORTIN ALPHA |
| CAI8054495.1 | IMPORTIN ALPHA |
| CAI8054497.1 | IMPORTIN ALPHA |
| CAI8054498.1 | IMPORTIN ALPHA |
| CAI8054499.1 | |
| CAI8054501.1 | |
| CAI8054500.1 | |
| CAI8054502.1 | |
| CAI8054503.1 | |
| CAI8054504.1 | BIOTIN PROTEIN LIGASE |
| CAI8054505.1 | BIOTIN PROTEIN LIGASE |
| CAI8054506.1 | BIOTIN PROTEIN LIGASE |
| CAI8054509.1 | ELONGATION FACTOR TU-RELATED |
| CAI8054507.1 | ELONGATION FACTOR TU-RELATED |
| CAI8054510.1 | ELONGATION FACTOR TU-RELATED |
| CAI8054508.1 | ELONGATION FACTOR TU-RELATED |
| CAI8054511.1 | ELONGATION FACTOR TU-RELATED |
| CAI8054512.1 | PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY F MEMBER 2-RELATED |
| CAI8054513.1 | PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY F MEMBER 2-RELATED |
| CAI8054514.1 | |
| CAI8054515.1 | |
| CAI8054518.1 | |
| CAI8054517.1 | |
| CAI8054516.1 | |
| CAI8054519.1 | |
| CAI8054521.1 |
