Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8054221.1 | |
| CAI8054222.1 | MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEIN A |
| CAI8054223.1 | NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 |
| CAI8054228.1 | TRANSLATIONAL ACTIVATOR GCN1-RELATED |
| CAI8054226.1 | TRANSLATIONAL ACTIVATOR GCN1-RELATED |
| CAI8054225.1 | TRANSLATIONAL ACTIVATOR GCN1-RELATED |
| CAI8054224.1 | TRANSLATIONAL ACTIVATOR GCN1-RELATED |
| CAI8054227.1 | TRANSLATIONAL ACTIVATOR GCN1-RELATED |
| CAI8054229.1 | |
| CAI8054230.1 | KELCH PROTEIN |
| CAI8054231.1 | |
| CAI8054232.1 | |
| CAI8054234.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8054235.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8054233.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8054236.1 | INTELECTIN |
| CAI8054237.1 | INTELECTIN |
| CAI8054238.1 | INTELECTIN |
| CAI8054239.1 | |
| CAI8054240.1 | |
| CAI8054241.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8054244.1 | UNCHARACTERIZED |
| CAI8054243.1 | UNCHARACTERIZED |
| CAI8054242.1 | UNCHARACTERIZED |
| CAI8054245.1 | |
| CAI8054248.1 | CORONIN |
| CAI8054246.1 | CORONIN |
| CAI8054247.1 | CORONIN |
| CAI8054249.1 | CORONIN |
| CAI8054251.1 | CORONIN |
| CAI8054250.1 | CORONIN |
| CAI8054252.1 | CORONIN |
| CAI8054253.1 | |
| CAI8054255.1 | DIACYLGLYCEROL KINASE |
| CAI8054254.1 | DIACYLGLYCEROL KINASE |
| CAI8054256.1 | DIACYLGLYCEROL KINASE |
| CAI8054257.1 | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED |
| CAI8054258.1 | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED |
| CAI8054260.1 | MEVALONATE KINASE/GALACTOKINASE |
| CAI8054259.1 | MEVALONATE KINASE/GALACTOKINASE |
| CAI8054262.1 | INACTIVE RHOMBOID PROTEIN |
| CAI8054261.1 | INACTIVE RHOMBOID PROTEIN |
| CAI8054263.1 | INACTIVE RHOMBOID PROTEIN |
| CAI8054266.1 | CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED |
| CAI8054265.1 | CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED |
| CAI8054264.1 | CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED |
| CAI8054269.1 | OS06G0237300 PROTEIN |
| CAI8054268.1 | CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED |
| CAI8054267.1 | OS06G0237300 PROTEIN |
| CAI8054270.1 | OS06G0237300 PROTEIN |
