Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8054321.1 | PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED |
| CAI8054322.1 | |
| CAI8054323.1 | THYMOSIN BETA |
| CAI8054324.1 | CYCLINS |
| CAI8054325.1 | CYCLINS |
| CAI8054328.1 | PDZ DOMAIN-CONTAINING PROTEIN 8 |
| CAI8054327.1 | PDZ DOMAIN-CONTAINING PROTEIN 8 |
| CAI8054329.1 | PDZ DOMAIN-CONTAINING PROTEIN 8 |
| CAI8054326.1 | PDZ DOMAIN-CONTAINING PROTEIN 8 |
| CAI8054330.1 | PDZ DOMAIN-CONTAINING PROTEIN 8 |
| CAI8054331.1 | PDZ DOMAIN-CONTAINING PROTEIN 8 |
| CAI8054332.1 | |
| CAI8054333.1 | |
| CAI8054334.1 | |
| CAI8054335.1 | |
| CAI8054336.1 | UBIQUITIN-CONJUGATING ENZYME E2 |
| CAI8054337.1 | UFM1-SPECIFIC PROTEASE 2 |
| CAI8054340.1 | |
| CAI8054338.1 | |
| CAI8054339.1 | UFM1-SPECIFIC PROTEASE 2 |
| CAI8054342.1 | CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE |
| CAI8054341.1 | CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE |
| CAI8054343.1 | CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE |
| CAI8054344.1 | CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE |
| CAI8054351.1 | CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 3 |
| CAI8054350.1 | CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 3 |
| CAI8054349.1 | CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 3 |
| CAI8054347.1 | CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 3 |
| CAI8054346.1 | CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 3 |
| CAI8054352.1 | CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 3 |
| CAI8054348.1 | CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 3 |
| CAI8054345.1 | CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 3 |
| CAI8054354.1 | CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 3 |
| CAI8054353.1 | CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 3 |
| CAI8054355.1 | CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 3 |
| CAI8054356.1 | CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 3 |
| CAI8054358.1 | GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE |
| CAI8054357.1 | GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE |
| CAI8054359.1 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED |
| CAI8054360.1 | GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 1 |
| CAI8054363.1 | HEPARANASE |
| CAI8054362.1 | HEPARANASE |
| CAI8054361.1 | HEPARANASE |
| CAI8054364.1 | HEPARANASE |
| CAI8054367.1 | EPH RECEPTOR A5 |
| CAI8054366.1 | PROTEIN SIDEKICK |
| CAI8054368.1 | PROTEIN SIDEKICK |
| CAI8054365.1 | |
| CAI8054369.1 | PROTEIN SIDEKICK |
| CAI8054370.1 | PROTEIN SIDEKICK |
