Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8054021.1 | HYDROXYPYRUVATE ISOMERASE |
| CAI8054022.1 | CONSERVED COMPONENT OF ABC TRANSPORTER FOR NATURAL AMINO ACIDS-RELATED |
| CAI8054023.1 | RNA POLYMERASE SIGMA-54 FACTOR |
| CAI8054025.1 | VALYL-TRNA SYNTHETASES |
| CAI8054024.1 | VALYL-TRNA SYNTHETASES |
| CAI8054027.1 | VALYL-TRNA SYNTHETASES |
| CAI8054026.1 | VALYL-TRNA SYNTHETASES |
| CAI8054028.1 | ACYL-COENZYME A THIOESTERASE THEM4 |
| CAI8054029.1 | L-ASPARTATE OXIDASE |
| CAI8054030.1 | SOLUBLE LYTIC MUREIN TRANSGLYCOSYLASE-RELATED |
| CAI8054031.1 | D-THREO-ALDOSE 1-DEHYDROGENASE |
| CAI8054033.1 | GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED |
| CAI8054032.1 | GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED |
| CAI8054034.1 | GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED |
| CAI8054035.1 | GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED |
| CAI8054036.1 | GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED |
| CAI8054037.1 | DYMECLIN |
| CAI8054040.1 | |
| CAI8054038.1 | |
| CAI8054039.1 | |
| CAI8054043.1 | |
| CAI8054042.1 | HEMOPEXIN DOMAIN-CONTAINING PROTEIN |
| CAI8054041.1 | |
| CAI8054044.1 | |
| CAI8054045.1 | |
| CAI8054046.1 | |
| CAI8054047.1 | SERINE/THREONINE-PROTEIN KINASE SBK1 |
| CAI8054048.1 | |
| CAI8054049.1 | |
| CAI8054050.1 | HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN |
| CAI8054051.1 | HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN |
| CAI8054053.1 | PEROXISOMAL 2,4-DIENOYL-COA REDUCTASE |
| CAI8054052.1 | PEROXISOMAL 2,4-DIENOYL-COA REDUCTASE |
| CAI8054058.1 | IFT140/172-RELATED |
| CAI8054056.1 | IFT140/172-RELATED |
| CAI8054057.1 | IFT140/172-RELATED |
| CAI8054055.1 | IFT140/172-RELATED |
| CAI8054054.1 | IFT140/172-RELATED |
| CAI8054060.1 | IFT140/172-RELATED |
| CAI8054059.1 | IFT140/172-RELATED |
| CAI8054061.1 | IFT140/172-RELATED |
| CAI8054062.1 | IFT140/172-RELATED |
| CAI8054063.1 | SECRETED PROTEIN-RELATED |
| CAI8054064.1 | ALPHA-N-ACETYLGLUCOSAMINIDASE |
| CAI8054065.1 | |
| CAI8054066.1 | SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED |
| CAI8054070.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8054071.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8054072.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8054069.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
