Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8053771.1 | RNA POLYMERASE SIGMA FACTOR RPO |
| CAI8053772.1 | RNA POLYMERASE SIGMA FACTOR RPO |
| CAI8053773.1 | RNA POLYMERASE SIGMA FACTOR RPO |
| CAI8053774.1 | DNA-BINDING PROTEIN HU |
| CAI8053775.1 | |
| CAI8053776.1 | |
| CAI8053777.1 | |
| CAI8053778.1 | CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 |
| CAI8053779.1 | CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 |
| CAI8053780.1 | CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 |
| CAI8053781.1 | |
| CAI8053782.1 | |
| CAI8053783.1 | |
| CAI8053784.1 | |
| CAI8053785.1 | |
| CAI8053786.1 | |
| CAI8053787.1 | |
| CAI8053788.1 | |
| CAI8053789.1 | |
| CAI8053790.1 | ZINC ION BINDING PROTEIN |
| CAI8053791.1 | |
| CAI8053792.1 | ENOYL-COA HYDRATASE-RELATED |
| CAI8053793.1 | ENOYL-COA HYDRATASE-RELATED |
| CAI8053796.1 | TAX1 BINDING PROTEIN-RELATED |
| CAI8053795.1 | TAX1 BINDING PROTEIN-RELATED |
| CAI8053794.1 | TAX1 BINDING PROTEIN-RELATED |
| CAI8053797.1 | MULTIVESICULAR BODY SUBUNIT 12B |
| CAI8053798.1 | |
| CAI8053801.1 | DUAL SPECIFICITY PROTEIN KINASE |
| CAI8053802.1 | DUAL SPECIFICITY PROTEIN KINASE |
| CAI8053800.1 | DUAL SPECIFICITY PROTEIN KINASE |
| CAI8053799.1 | DUAL SPECIFICITY PROTEIN KINASE |
| CAI8053803.1 | DUAL SPECIFICITY PROTEIN KINASE |
| CAI8053804.1 | PEPTIDASE M20 |
| CAI8053805.1 | PEPTIDASE M20 |
| CAI8053806.1 | PEPTIDASE M20 |
| CAI8053808.1 | |
| CAI8053807.1 | |
| CAI8053809.1 | PROTEIN ARGININE N-METHYLTRANSFERASE |
| CAI8053810.1 | PROTEIN ARGININE N-METHYLTRANSFERASE |
| CAI8053811.1 | PROTEIN ARGININE N-METHYLTRANSFERASE |
| CAI8053812.1 | BOLA-LIKE PROTEIN 3 |
| CAI8053813.1 | UNCHARACTERIZED |
| CAI8053815.1 | MYOTONIC DYSTROPHY S/T KINASE-RELATED |
| CAI8053816.1 | COP1-INTERACTIVE PROTEIN 1 |
| CAI8053817.1 | MYOSIN HEAVY CHAIN, NON-MUSCLE |
| CAI8053818.1 | MYOSIN HEAVY CHAIN, NON-MUSCLE |
| CAI8053820.1 | |
| CAI8053819.1 | |
| CAI8053821.1 |
