Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8053571.1 | UBIQUITIN-PROTEIN LIGASE E3C |
| CAI8053572.1 | |
| CAI8053573.1 | PROTEIN O-LINKED-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE 1 |
| CAI8053574.1 | |
| CAI8053575.1 | |
| CAI8053581.1 | TRANS-SULFURATION ENZYME FAMILY MEMBER |
| CAI8053579.1 | TRANS-SULFURATION ENZYME FAMILY MEMBER |
| CAI8053580.1 | TRANS-SULFURATION ENZYME FAMILY MEMBER |
| CAI8053576.1 | TRANS-SULFURATION ENZYME FAMILY MEMBER |
| CAI8053577.1 | |
| CAI8053578.1 | |
| CAI8053583.1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| CAI8053582.1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| CAI8053586.1 | |
| CAI8053585.1 | |
| CAI8053584.1 | ZINC FINGER PROTEIN 294 |
| CAI8053587.1 | |
| CAI8053588.1 | ZINC FINGER PROTEIN 294 |
| CAI8053589.1 | ZINC FINGER PROTEIN 294 |
| CAI8053590.1 | ZINC FINGER PROTEIN 294 |
| CAI8053592.1 | MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE |
| CAI8053591.1 | MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE |
| CAI8053593.1 | |
| CAI8053594.1 | |
| CAI8053595.1 | |
| CAI8053596.1 | RNA 3' TERMINAL PHOSPHATE CYCLASE |
| CAI8053597.1 | |
| CAI8053598.1 | NADH-CYTOCHROME B5 REDUCTASE |
| CAI8053599.1 | YTH YT521-B HOMOLOGY DOMAIN-CONTAINING |
| CAI8053603.1 | YTH YT521-B HOMOLOGY DOMAIN-CONTAINING |
| CAI8053602.1 | |
| CAI8053601.1 | YTH YT521-B HOMOLOGY DOMAIN-CONTAINING |
| CAI8053600.1 | YTH YT521-B HOMOLOGY DOMAIN-CONTAINING |
| CAI8053605.1 | YTH YT521-B HOMOLOGY DOMAIN-CONTAINING |
| CAI8053604.1 | YTH YT521-B HOMOLOGY DOMAIN-CONTAINING |
| CAI8053606.1 | |
| CAI8053607.1 | |
| CAI8053609.1 | WD40 REPEAT PROTEIN |
| CAI8053608.1 | TRANSCRIPTION INITIATION FACTOR TFIID |
| CAI8053610.1 | SMALL MEMBRANE PROTEIN-RELATED |
| CAI8053611.1 | SMALL MEMBRANE PROTEIN-RELATED |
| CAI8053612.1 | SMALL MEMBRANE PROTEIN-RELATED |
| CAI8053613.1 | SMALL MEMBRANE PROTEIN-RELATED |
| CAI8053614.1 | SMALL MEMBRANE PROTEIN-RELATED |
| CAI8053615.1 | ARSENITE-RESISTANCE PROTEIN 2 |
| CAI8053616.1 | |
| CAI8053621.1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| CAI8053622.1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| CAI8053624.1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| CAI8053625.1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
