Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8053371.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8053373.1 | DIAMINOPIMELATE DECARBOXYLASE |
| CAI8053372.1 | DIAMINOPIMELATE DECARBOXYLASE |
| CAI8053377.1 | ARGININOSUCCINATE LYASE |
| CAI8053376.1 | ARGININOSUCCINATE LYASE |
| CAI8053375.1 | ARGININOSUCCINATE LYASE |
| CAI8053374.1 | ARGININOSUCCINATE LYASE |
| CAI8053378.1 | COBW-RELATED |
| CAI8053379.1 | UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE 1, MITOCHONDRIAL-RELATED |
| CAI8053381.1 | CELL DIVISION PROTEIN FTSZ-RELATED |
| CAI8053380.1 | CELL DIVISION PROTEIN FTSZ-RELATED |
| CAI8053382.1 | CELL DIVISION PROTEIN FTSA-RELATED |
| CAI8053383.1 | UDP-N-ACETYLENOLPYRUVOYLGLUCOSAMINE REDUCTASE |
| CAI8053384.1 | UDP-N-ACETYLMURAMATE--L-ALANINE LIGASE-RELATED |
| CAI8053385.1 | UDP-N-ACETYLGLUCOSAMINE--N-ACETYLMURAMYL-(PENTAPEPTIDE) PYROPHOSPHORYL-UNDECAPRENOL N-ACETYLGLUCOSAMINE TRANSFERASE 1 |
| CAI8053386.1 | CELL CYCLE PROTEIN |
| CAI8053387.1 | UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE |
| CAI8053388.1 | UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-ALANINE LIGASE |
| CAI8053389.1 | SOMETHING ABOUT SILENCING PROTEIN 10-RELATED |
| CAI8053391.1 | SOMETHING ABOUT SILENCING PROTEIN 10-RELATED |
| CAI8053390.1 | |
| CAI8053392.1 | SOMETHING ABOUT SILENCING PROTEIN 10-RELATED |
| CAI8053393.1 | SOMETHING ABOUT SILENCING PROTEIN 10-RELATED |
| CAI8053395.1 | |
| CAI8053394.1 | |
| CAI8053396.1 | |
| CAI8053397.1 | NICOLIN 1 |
| CAI8053399.1 | RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL |
| CAI8053398.1 | RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL |
| CAI8053400.1 | 6-PHOSPHOGLUCONATE DEHYDROGENASE |
| CAI8053401.1 | 6-PHOSPHOGLUCONATE DEHYDROGENASE |
| CAI8053403.1 | UNCHARACTERIZED |
| CAI8053404.1 | UNCHARACTERIZED |
| CAI8053402.1 | UNCHARACTERIZED |
| CAI8053405.1 | GAMMA-GLUTAMYLPUTRESCINE SYNTHETASE |
| CAI8053406.1 | UREASE |
| CAI8053407.1 | UREASE |
| CAI8053408.1 | UREASE ACCESSORY PROTEIN G |
| CAI8053409.1 | ATP7, ISOFORM B |
| CAI8053410.1 | ATP7, ISOFORM B |
| CAI8053411.1 | |
| CAI8053412.1 | SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM |
| CAI8053413.1 | |
| CAI8053414.1 | 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL |
| CAI8053415.1 | |
| CAI8053416.1 | MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEIN A |
| CAI8053417.1 | MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEIN A |
| CAI8053418.1 | TRANS-SULFURATION ENZYME FAMILY MEMBER |
| CAI8053419.1 | TRANS-SULFURATION ENZYME FAMILY MEMBER |
| CAI8053420.1 |
