Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8053122.1 | REPRESSOR OF YIELD OF DENV PROTEIN |
| CAI8053121.1 | |
| CAI8053123.1 | RE74312P |
| CAI8053124.1 | RE74312P |
| CAI8053125.1 | RE74312P |
| CAI8053127.1 | RE74312P |
| CAI8053128.1 | RE74312P |
| CAI8053126.1 | RE74312P |
| CAI8053129.1 | RE74312P |
| CAI8053130.1 | |
| CAI8053135.1 | SEC24-RELATED PROTEIN |
| CAI8053133.1 | SEC24-RELATED PROTEIN |
| CAI8053132.1 | SEC24-RELATED PROTEIN |
| CAI8053136.1 | SEC24-RELATED PROTEIN |
| CAI8053137.1 | SEC24-RELATED PROTEIN |
| CAI8053138.1 | SEC24-RELATED PROTEIN |
| CAI8053134.1 | SEC24-RELATED PROTEIN |
| CAI8053131.1 | |
| CAI8053139.1 | NNMT/PNMT/TEMT FAMILY MEMBER |
| CAI8053140.1 | MALTODEXTRIN IMPORT ATP-BINDING PROTEIN MSMX |
| CAI8053141.1 | |
| CAI8053142.1 | CHOLINE MONOOXYGENASE, CHLOROPLASTIC |
| CAI8053143.1 | |
| CAI8053144.1 | |
| CAI8053145.1 | D-ALLOSE-BINDING PERIPLASMIC PROTEIN-RELATED |
| CAI8053146.1 | CARBOHYDRATE TRANSPORT ATP-BINDING PROTEIN MG119-RELATED |
| CAI8053147.1 | CARBOHYDRATE TRANSPORT ATP-BINDING PROTEIN MG119-RELATED |
| CAI8053148.1 | ALKANESULFONATE MONOOXYGENASE |
| CAI8053149.1 | BLR5612 PROTEIN |
| CAI8053150.1 | |
| CAI8053151.1 | |
| CAI8053152.1 | ENOYL-COA HYDRATASE |
| CAI8053153.1 | OXIDOREDUCTASE, SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY (AFU_ORTHOLOGUE AFUA_5G02870) |
| CAI8053154.1 | XANTHINE PHOSPHORIBOSYLTRANSFERASE |
| CAI8053155.1 | XANTHINE PHOSPHORIBOSYLTRANSFERASE |
| CAI8053156.1 | PYRROLINE-5-CARBOXYLATE REDUCTASE |
| CAI8053157.1 | PYRROLINE-5-CARBOXYLATE REDUCTASE |
| CAI8053159.1 | REGULATOR OF RPOS |
| CAI8053158.1 | REGULATOR OF RPOS |
| CAI8053160.1 | TRANSCRIPTIONAL REGULATOR, MARR FAMILY |
| CAI8053161.1 | AMINO ACID AMINOTRANSFERASE |
| CAI8053162.1 | GLYCOSYLTRANSFERASE |
| CAI8053163.1 | MOLYBDOPTERIN SYNTHASE RELATED |
| CAI8053164.1 | MOLYBDOPTERIN SYNTHASE SULFUR CARRIER SUBUNIT |
| CAI8053165.1 | |
| CAI8053175.1 | UVRC/OXIDOREDUCTASE |
| CAI8053174.1 | UVRC/OXIDOREDUCTASE |
| CAI8053173.1 | UVRC/OXIDOREDUCTASE |
| CAI8053172.1 | UVRC/OXIDOREDUCTASE |
| CAI8053171.1 | UVRC/OXIDOREDUCTASE |
