Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8052821.1 | 5'-NUCLEOTIDASE SURE |
| CAI8052822.1 | SIGMA FACTOR F FLAGELLAR |
| CAI8052823.1 | ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED |
| CAI8052824.1 | METALLOPROTEASE TLDD |
| CAI8052825.1 | PHAGE INTEGRASE-RELATED |
| CAI8052826.1 | PROTEIN SMF |
| CAI8052827.1 | PHAGE INTEGRASE-RELATED |
| CAI8052828.1 | |
| CAI8052829.1 | CELL DIVISION PROTEIN FTSA-RELATED |
| CAI8052830.1 | CELL DIVISION PROTEIN FTSA-RELATED |
| CAI8052831.1 | CELL CYCLE PROTEIN |
| CAI8052832.1 | |
| CAI8052833.1 | |
| CAI8052834.1 | |
| CAI8052838.1 | SYNAPTIC VESICLE GLYCOPROTEIN 2 |
| CAI8052837.1 | SYNAPTIC VESICLE GLYCOPROTEIN 2 |
| CAI8052836.1 | SYNAPTIC VESICLE GLYCOPROTEIN 2 |
| CAI8052835.1 | SYNAPTIC VESICLE GLYCOPROTEIN 2 |
| CAI8052839.1 | SYNAPTIC VESICLE GLYCOPROTEIN 2 |
| CAI8052840.1 | SYNAPTIC VESICLE GLYCOPROTEIN 2 |
| CAI8052841.1 | VON WILLEBRAND FACTOR C AND EGF DOMAIN-CONTAINING PROTEIN |
| CAI8052842.1 | COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED |
| CAI8052843.1 | LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR |
| CAI8052844.1 | |
| CAI8052845.1 | LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR |
| CAI8052846.1 | |
| CAI8052847.1 | ORNITHINE DECARBOXYLASE ANTIZYME |
| CAI8052850.1 | COMM DOMAIN-CONTAINING PROTEIN 4-8 FAMILY MEMBER |
| CAI8052849.1 | COMM DOMAIN-CONTAINING PROTEIN 4-8 FAMILY MEMBER |
| CAI8052848.1 | COMM DOMAIN-CONTAINING PROTEIN 4-8 FAMILY MEMBER |
| CAI8052851.1 | COMM DOMAIN-CONTAINING PROTEIN 4-8 FAMILY MEMBER |
| CAI8052853.1 | SIGNAL PEPTIDASE COMPLEX CATALYTIC SUBUNIT SEC11 |
| CAI8052852.1 | SIGNAL PEPTIDASE COMPLEX CATALYTIC SUBUNIT SEC11 |
| CAI8052854.1 | SIGNAL PEPTIDASE COMPLEX CATALYTIC SUBUNIT SEC11 |
| CAI8052857.1 | |
| CAI8052856.1 | |
| CAI8052855.1 | |
| CAI8052858.1 | |
| CAI8052859.1 | |
| CAI8052861.1 | |
| CAI8052860.1 | NACHT DOMAIN-CONTAINING PROTEIN |
| CAI8052862.1 | |
| CAI8052865.1 | PROTEIN CBR-CLEC-78 |
| CAI8052864.1 | PROTEIN CBR-CLEC-78 |
| CAI8052863.1 | PROTEIN CBR-CLEC-78 |
| CAI8052866.1 | |
| CAI8052867.1 | |
| CAI8052868.1 | |
| CAI8052870.1 | |
| CAI8052869.1 |
