About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8019431.1ANTI-SIGMA-F FACTOR RSBW-RELATED
CAI8019432.1ANTI-SIGMA FACTOR ANTAGONIST TM_1081-RELATED-RELATED
CAI8019433.1STAGE II SPORULATION PROTEIN E-RELATED
CAI8019434.1-
CAI8019435.1ABC TRANSPORTER, SUBSTRATE-BINDING LIPOPROTEIN-RELATED
CAI8019436.1PURINE EFFLUX PUMP PBUE
CAI8019437.1TRANS-SULFURATION ENZYME FAMILY MEMBER
CAI8019438.1OS07G0260300 PROTEIN
CAI8019439.1COLD SHOCK DOMAIN CONTAINING PROTEINS
CAI8019442.1GLYCINE DEHYDROGENASE, DECARBOXYLATING
CAI8019441.1GLYCINE DEHYDROGENASE, DECARBOXYLATING
CAI8019440.1GLYCINE DEHYDROGENASE, DECARBOXYLATING
CAI8019443.1GLYCINE DEHYDROGENASE, DECARBOXYLATING
CAI8019444.1GLYCINE CLEAVAGE SYSTEM P-PROTEIN
CAI8019445.1GLYCINE CLEAVAGE SYSTEM H PROTEIN
CAI8019446.1IMPORTIN BETA
CAI8019447.1PENICILLIN-BINDING PROTEIN
CAI8019448.1-
CAI8019449.1REMODELING AND SPACING FACTOR 1
CAI8019450.1-
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