Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8052321.1 | |
| CAI8052322.1 | XYLOGLUCANASE (EUROFUNG) |
| CAI8052323.1 | |
| CAI8052324.1 | ARYLACETAMIDE DEACETYLASE |
| CAI8052325.1 | GLUTATHIONE S-TRANSFERASE KAPPA |
| CAI8052326.1 | PEROXISOMAL SARCOSINE OXIDASE |
| CAI8052327.1 | ACETYL-COA HYDROLASE-RELATED |
| CAI8052328.1 | DNA-3-METHYLADENINE GLYCOSYLASE 1 |
| CAI8052329.1 | OXIDOREDUCTASE-RELATED |
| CAI8052330.1 | ACYLPYRUVASE |
| CAI8052331.1 | OCTANOYLTRANSFERASE |
| CAI8052332.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8052333.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8052337.1 | TRANSCRIPTION FACTOR DP |
| CAI8052336.1 | TRANSCRIPTION FACTOR DP |
| CAI8052335.1 | TRANSCRIPTION FACTOR DP |
| CAI8052334.1 | TRANSCRIPTION FACTOR DP |
| CAI8052339.1 | TRANSCRIPTION FACTOR DP |
| CAI8052338.1 | TRANSCRIPTION FACTOR DP |
| CAI8052340.1 | TRANSCRIPTION FACTOR DP |
| CAI8052341.1 | |
| CAI8052342.1 | |
| CAI8052346.1 | NINEIN |
| CAI8052347.1 | NINEIN |
| CAI8052345.1 | |
| CAI8052344.1 | |
| CAI8052343.1 | |
| CAI8052348.1 | |
| CAI8052349.1 | CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE |
| CAI8052350.1 | CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE |
| CAI8052351.1 | |
| CAI8052352.1 | |
| CAI8052353.1 | |
| CAI8052356.1 | |
| CAI8052355.1 | LIPOXYGENASE |
| CAI8052354.1 | NACHT DOMAIN-CONTAINING PROTEIN |
| CAI8052357.1 | LIPOXYGENASE |
| CAI8052358.1 | |
| CAI8052359.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8052360.1 | VACUOLAR SORTING PROTEIN 35 |
| CAI8052361.1 | |
| CAI8052362.1 | |
| CAI8052363.1 | |
| CAI8052364.1 | HISTONE ACETYLTRANSFERASE |
| CAI8052365.1 | HISTONE ACETYLTRANSFERASE |
| CAI8052366.1 | HISTONE ACETYLTRANSFERASE |
| CAI8052367.1 | |
| CAI8052368.1 | DYNEIN HEAVY CHAIN |
| CAI8052369.1 | DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN |
| CAI8052370.1 |
