Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8052071.1 | ATP-DEPENDENT DNA HELICASE |
| CAI8052072.1 | |
| CAI8052074.1 | |
| CAI8052073.1 | SYNTENIN RELATED |
| CAI8052076.1 | DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 |
| CAI8052075.1 | DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 |
| CAI8052077.1 | SACSIN |
| CAI8052078.1 | ZINC FINGER, C3HC4 TYPE (RING FINGER) FAMILY PROTEIN |
| CAI8052079.1 | SACSIN |
| CAI8052080.1 | ZINC FINGER, C3HC4 TYPE (RING FINGER) FAMILY PROTEIN |
| CAI8052083.1 | TOLL-INTERACTING PROTEIN |
| CAI8052082.1 | TOLL-INTERACTING PROTEIN |
| CAI8052081.1 | TOLL-INTERACTING PROTEIN |
| CAI8052084.1 | |
| CAI8052085.1 | APRATAXIN-RELATED |
| CAI8052086.1 | |
| CAI8052087.1 | |
| CAI8052088.1 | |
| CAI8052089.1 | APRATAXIN-RELATED |
| CAI8052090.1 | KELCH PROTEIN |
| CAI8052091.1 | KELCH REPEAT AND BTB DOMAIN-CONTAINING PROTEIN 13-RELATED |
| CAI8052092.1 | RECEPTOR-LIKE PROTEIN 55 |
| CAI8052095.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8052094.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8052093.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8052096.1 | |
| CAI8052099.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8052098.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8052097.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8052100.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8052101.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8052103.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8052104.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8052102.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8052105.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8052106.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8052108.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8052107.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8052109.1 | |
| CAI8052110.1 | |
| CAI8052111.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8052112.1 | |
| CAI8052114.1 | |
| CAI8052113.1 | |
| CAI8052116.1 | OS01G0948300 PROTEIN |
| CAI8052115.1 | |
| CAI8052117.1 | |
| CAI8052119.1 | ZINC-TYPE ALCOHOL DEHYDROGENASE-LIKE |
| CAI8052118.1 | ZINC-TYPE ALCOHOL DEHYDROGENASE-LIKE |
| CAI8052120.1 | TRANSPOSASE |
