Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8051871.1 | |
| CAI8051872.1 | |
| CAI8051876.1 | 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE |
| CAI8051875.1 | 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE |
| CAI8051877.1 | 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE |
| CAI8051874.1 | 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE |
| CAI8051873.1 | 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE |
| CAI8051878.1 | DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE FAMILY MEMBER |
| CAI8051879.1 | RIBOSOME RECYCLING FACTOR |
| CAI8051880.1 | URIDYLATE KINASE |
| CAI8051881.1 | ELONGATION FACTOR TS |
| CAI8051882.1 | 30S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLAR |
| CAI8051883.1 | 30S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLAR |
| CAI8051884.1 | |
| CAI8051885.1 | ENDONUCLEASE IV ENDODEOXYRIBONUCLEASE IV |
| CAI8051890.1 | S-ADENOSYL-METHYLTRANSFERASE MRAW |
| CAI8051891.1 | S-ADENOSYL-METHYLTRANSFERASE MRAW |
| CAI8051889.1 | S-ADENOSYL-METHYLTRANSFERASE MRAW |
| CAI8051892.1 | S-ADENOSYL-METHYLTRANSFERASE MRAW |
| CAI8051888.1 | S-ADENOSYL-METHYLTRANSFERASE MRAW |
| CAI8051886.1 | S-ADENOSYL-METHYLTRANSFERASE MRAW |
| CAI8051887.1 | S-ADENOSYL-METHYLTRANSFERASE MRAW |
| CAI8051894.1 | S-ADENOSYL-METHYLTRANSFERASE MRAW |
| CAI8051895.1 | S-ADENOSYL-METHYLTRANSFERASE MRAW |
| CAI8051893.1 | S-ADENOSYL-METHYLTRANSFERASE MRAW |
| CAI8051896.1 | S-ADENOSYL-METHYLTRANSFERASE MRAW |
| CAI8051897.1 | S-ADENOSYL-METHYLTRANSFERASE MRAW |
| CAI8051898.1 | |
| CAI8051899.1 | VITAMIN B12-DEPENDENT RIBONUCLEOTIDE REDUCTASE |
| CAI8051900.1 | VITAMIN B12-DEPENDENT RIBONUCLEOTIDE REDUCTASE |
| CAI8051901.1 | |
| CAI8051902.1 | |
| CAI8051903.1 | |
| CAI8051904.1 | |
| CAI8051906.1 | |
| CAI8051905.1 | |
| CAI8051907.1 | |
| CAI8051908.1 | |
| CAI8051909.1 | |
| CAI8051910.1 | |
| CAI8051911.1 | |
| CAI8051912.1 | |
| CAI8051913.1 | |
| CAI8051914.1 | |
| CAI8051915.1 | |
| CAI8051923.1 | |
| CAI8051916.1 | |
| CAI8051918.1 | |
| CAI8051919.1 | |
| CAI8051917.1 |
