Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8052021.1 | ATP SYNTHASE GAMMA CHAIN |
| CAI8052022.1 | ATP SYNTHASE |
| CAI8052023.1 | REDOX-SENSING TRANSCRIPTIONAL REPRESSOR REX |
| CAI8052024.1 | ARSENITE METHYLTRANSFERASE |
| CAI8052025.1 | ENOLASE SUPERFAMILY, MANDELATE RACEMASE |
| CAI8052026.1 | |
| CAI8052027.1 | NICOTINAMIDE-NUCLEOTIDE AMIDOHYDROLASE PNCC |
| CAI8052028.1 | ENDORIBONUCLEASE-RELATED |
| CAI8052029.1 | PEROXYUREIDOACRYLATE/UREIDOACRYLATE AMIDOHYDROLASE-RELATED |
| CAI8052030.1 | NUDIX HYDROLASE, NUDC SUBFAMILY |
| CAI8052031.1 | NADPH NITROREDUCTASE |
| CAI8052032.1 | |
| CAI8052033.1 | DOUBLE-STRANDED RNA-BINDING PROTEIN 6 |
| CAI8052034.1 | |
| CAI8052035.1 | TRANSCRIPTION FACTOR E2F |
| CAI8052036.1 | MITOCHONDRIAL RIBOSOMAL PROTEIN L30 |
| CAI8052037.1 | |
| CAI8052039.1 | |
| CAI8052038.1 | |
| CAI8052040.1 | |
| CAI8052042.1 | NEPHRIN |
| CAI8052043.1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| CAI8052041.1 | |
| CAI8052044.1 | - |
| CAI8052045.1 | NICOTINATE-NUCLEOTIDE--DIMETHYLBENZIMIDAZOLE PHOSPHORIBOSYLTRANSFERASE |
| CAI8052046.1 | HEMIN IMPORT ATP-BINDING PROTEIN HMUV |
| CAI8052047.1 | FERRIC ENTEROBACTIN TRANSPORT SYSTEM PERMEASE PROTEIN |
| CAI8052048.1 | |
| CAI8052049.1 | DNA TOPOISOMERASE, TYPE IA, CORE |
| CAI8052050.1 | DNA TOPOISOMERASE, TYPE IA, CORE |
| CAI8052051.1 | PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 |
| CAI8052052.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| CAI8052053.1 | GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED |
| CAI8052054.1 | GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED |
| CAI8052055.1 | NADH-SPECIFIC METHYLGLYOXAL REDUCTASE-RELATED |
| CAI8052056.1 | |
| CAI8052057.1 | METHYLMALONYL-COA MUTASE, MITOCHONDRIAL-RELATED |
| CAI8052058.1 | METHYLMALONYL-COA MUTASE, MITOCHONDRIAL-RELATED |
| CAI8052059.1 | |
| CAI8052060.1 | |
| CAI8052061.1 | |
| CAI8052062.1 | SPERMATOGENESIS-ASSOCIATED SERINE-RICH PROTEIN 2-RELATED |
| CAI8052063.1 | |
| CAI8052067.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8052068.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8052066.1 | |
| CAI8052065.1 | |
| CAI8052064.1 | |
| CAI8052069.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8052070.1 |
