Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8052171.1 | PROTEIN C7ORF21 |
| CAI8052172.1 | |
| CAI8052173.1 | |
| CAI8052174.1 | DNA2/NAM7 HELICASE FAMILY |
| CAI8052175.1 | DNA2/NAM7 HELICASE FAMILY |
| CAI8052176.1 | |
| CAI8052177.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8052178.1 | METHYLMALONYL-COA EPIMERASE |
| CAI8052179.1 | PEPTIDASE M20 |
| CAI8052180.1 | |
| CAI8052181.1 | ENDORIBONUCLEASE-RELATED |
| CAI8052183.1 | STRAWBERRY NOTCH-RELATED |
| CAI8052182.1 | STRAWBERRY NOTCH-RELATED |
| CAI8052184.1 | |
| CAI8052185.1 | DNA2/NAM7 HELICASE FAMILY |
| CAI8052186.1 | |
| CAI8052187.1 | |
| CAI8052188.1 | |
| CAI8052190.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8052191.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8052192.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8052189.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8052193.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8052194.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8052198.1 | |
| CAI8052196.1 | |
| CAI8052197.1 | |
| CAI8052199.1 | |
| CAI8052195.1 | REVERSE TRANSCRIPTASES |
| CAI8052200.1 | |
| CAI8052201.1 | ESTERASE OVCA2 |
| CAI8052202.1 | ALKYLATED DNA REPAIR PROTEIN ALKB-RELATED |
| CAI8052203.1 | ALKYLATED DNA REPAIR PROTEIN ALKB-RELATED |
| CAI8052204.1 | UNCHARACTERIZED |
| CAI8052205.1 | UNCHARACTERIZED |
| CAI8052207.1 | RAPSYN-RELATED |
| CAI8052208.1 | RAPSYN-RELATED |
| CAI8052206.1 | |
| CAI8052209.1 | 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED |
| CAI8052210.1 | 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED |
| CAI8052211.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR |
| CAI8052212.1 | SCY1-RELATED S/T PROTEIN KINASE-LIKE |
| CAI8052215.1 | PPP4R2-RELATED PROTEIN |
| CAI8052214.1 | PPP4R2-RELATED PROTEIN |
| CAI8052216.1 | PPP4R2-RELATED PROTEIN |
| CAI8052213.1 | PPP4R2-RELATED PROTEIN |
| CAI8052217.1 | PPP4R2-RELATED PROTEIN |
| CAI8052218.1 | DISCS LARGE |
| CAI8052219.1 | CLASPIN |
| CAI8052222.1 | TSEC-2-RELATED |
