Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8051971.1 | NUCLEAR MITOTIC APPARATUS PROTEIN 1-RELATED |
| CAI8051970.1 | NUCLEAR MITOTIC APPARATUS PROTEIN 1-RELATED |
| CAI8051973.1 | NUCLEAR MITOTIC APPARATUS PROTEIN 1-RELATED |
| CAI8051974.1 | NUCLEAR MITOTIC APPARATUS PROTEIN 1-RELATED |
| CAI8051975.1 | |
| CAI8051976.1 | MOXR FAMILY PROTEIN |
| CAI8051977.1 | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA |
| CAI8051978.1 | N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE |
| CAI8051979.1 | REGULATOR OF RPOS |
| CAI8051980.1 | REGULATOR OF RPOS |
| CAI8051981.1 | |
| CAI8051982.1 | WD40 REPEAT PROTEIN |
| CAI8051984.1 | SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA |
| CAI8051983.1 | SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA |
| CAI8051985.1 | TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTIC |
| CAI8051986.1 | |
| CAI8051987.1 | |
| CAI8051988.1 | N-ACETYLGLUCOSAMINE-6-PHOSPHATE DEACETYLASE |
| CAI8051989.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI8051990.1 | 50S RIBOSOMAL PROTEIN L3 |
| CAI8051991.1 | 50S RIBOSOMAL PROTEIN L4 |
| CAI8051992.1 | RIBOSOMAL PROTEIN L2 |
| CAI8051993.1 | 60S RIBOSOMAL PROTEIN L11-RELATED |
| CAI8051994.1 | 60S/50S RIBOSOMAL PROTEIN L6/L9 |
| CAI8051995.1 | SECY/SEC61-ALPHA FAMILY MEMBER |
| CAI8051996.1 | SECY/SEC61-ALPHA FAMILY MEMBER |
| CAI8051997.1 | SECY/SEC61-ALPHA FAMILY MEMBER |
| CAI8051998.1 | |
| CAI8051999.1 | |
| CAI8052000.1 | RIBOSOMAL PROTEIN L17 |
| CAI8052001.1 | |
| CAI8052002.1 | |
| CAI8052004.1 | DEP DOMAIN PROTEIN |
| CAI8052003.1 | DEP DOMAIN PROTEIN |
| CAI8052005.1 | ES1 PROTEIN HOMOLOG, MITOCHONDRIAL |
| CAI8052006.1 | UNCHARACTERIZED |
| CAI8052007.1 | |
| CAI8052009.1 | METHYLMALONYL-COA MUTASE, MITOCHONDRIAL-RELATED |
| CAI8052008.1 | METHYLMALONYL-COA MUTASE, MITOCHONDRIAL-RELATED |
| CAI8052010.1 | TYROSYL-TRNA SYNTHETASE |
| CAI8052011.1 | RIBOFLAVIN KINASE/FMN ADENYLYLTRANSFERASE |
| CAI8052012.1 | |
| CAI8052013.1 | PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE |
| CAI8052014.1 | |
| CAI8052015.1 | VON HIPPEL-LINDAU PROTEIN |
| CAI8052016.1 | ATP SYNTHASE LIPID-BINDING PROTEIN, MITOCHONDRIAL |
| CAI8052017.1 | |
| CAI8052018.1 | ATP SYNTHASE SUBUNIT B', CHLOROPLASTIC |
| CAI8052019.1 | ATP SYNTHASE DELTA CHAIN |
| CAI8052020.1 | ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL |
