Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8052121.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
| CAI8052122.1 | PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 |
| CAI8052123.1 | ACETYL-COENZYME A SYNTHETASE |
| CAI8052124.1 | REPLICATIVE DNA HELICASE DNAB |
| CAI8052125.1 | REPLICATIVE DNA HELICASE DNAB |
| CAI8052126.1 | |
| CAI8052133.1 | PUTATIVE ATP-ASE |
| CAI8052132.1 | PUTATIVE ATP-ASE |
| CAI8052131.1 | PUTATIVE ATP-ASE |
| CAI8052130.1 | PUTATIVE ATP-ASE |
| CAI8052129.1 | PUTATIVE ATP-ASE |
| CAI8052128.1 | PUTATIVE ATP-ASE |
| CAI8052127.1 | PUTATIVE ATP-ASE |
| CAI8052134.1 | |
| CAI8052135.1 | |
| CAI8052136.1 | CYTOKINE RECEPTOR |
| CAI8052137.1 | |
| CAI8052138.1 | SIGNALING LYMPHOCYTIC ACTIVATION MOLECULE |
| CAI8052139.1 | |
| CAI8052140.1 | |
| CAI8052141.1 | NEPHRIN |
| CAI8052142.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8052143.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8052147.1 | CYTOKINE RECEPTOR |
| CAI8052145.1 | CYTOKINE RECEPTOR |
| CAI8052144.1 | BASIGIN RELATED |
| CAI8052146.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8052148.1 | CYTOKINE RECEPTOR |
| CAI8052149.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8052150.1 | |
| CAI8052151.1 | INNER MEMBRANE TRANSPORT PROTEIN YAJR |
| CAI8052152.1 | |
| CAI8052153.1 | |
| CAI8052154.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8052155.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8052156.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8052158.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8052157.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8052159.1 | |
| CAI8052161.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8052160.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8052162.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8052166.1 | IRE1-RELATED |
| CAI8052165.1 | IRE1-RELATED |
| CAI8052164.1 | IRE1-RELATED |
| CAI8052163.1 | IRE1-RELATED |
| CAI8052167.1 | IRE1-RELATED |
| CAI8052168.1 | OVOCHYMASE-RELATED |
| CAI8052169.1 | COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED |
| CAI8052170.1 | BONUS, ISOFORM C-RELATED |
