Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8052223.1 | TSEC-2-RELATED |
| CAI8052220.1 | TSEC-2-RELATED |
| CAI8052221.1 | TSEC-2-RELATED |
| CAI8052225.1 | TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED |
| CAI8052224.1 | TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED |
| CAI8052226.1 | UNCHARACTERIZED |
| CAI8052228.1 | THYROID HORMONE RECEPTOR-ASSOCIATED PROTEIN-RELATED |
| CAI8052227.1 | THYROID HORMONE RECEPTOR-ASSOCIATED PROTEIN-RELATED |
| CAI8052229.1 | |
| CAI8052230.1 | |
| CAI8052231.1 | 2-HYDROXYACID DEHYDROGENASE-RELATED |
| CAI8052232.1 | 2-HYDROXYACID DEHYDROGENASE-RELATED |
| CAI8052233.1 | GDP-D-GLUCOSE PHOSPHORYLASE 1 |
| CAI8052234.1 | GDP-D-GLUCOSE PHOSPHORYLASE 1 |
| CAI8052235.1 | GDP-D-GLUCOSE PHOSPHORYLASE 1 |
| CAI8052236.1 | GDP-D-GLUCOSE PHOSPHORYLASE 1 |
| CAI8052237.1 | GDP-D-GLUCOSE PHOSPHORYLASE 1 |
| CAI8052238.1 | |
| CAI8052239.1 | |
| CAI8052252.1 | MASK PROTEIN |
| CAI8052253.1 | MOLTING PROTEIN MLT-4 |
| CAI8052248.1 | SURFACE ANTIGEN BSPA-LIKE-RELATED |
| CAI8052251.1 | ANKYRIN REPEAT PROTEIN |
| CAI8052254.1 | ANKYRIN REPEAT AND DEATH DOMAIN-CONTAINING PROTEIN |
| CAI8052247.1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| CAI8052250.1 | SURFACE ANTIGEN BSPA-LIKE-RELATED |
| CAI8052249.1 | MASK PROTEIN |
| CAI8052245.1 | ANKYRIN REPEAT FAMILY PROTEIN |
| CAI8052246.1 | MASK PROTEIN |
| CAI8052243.1 | MASK PROTEIN |
| CAI8052244.1 | MASK PROTEIN |
| CAI8052240.1 | ANKYRIN REPEAT CONTAINING |
| CAI8052242.1 | MASK PROTEIN |
| CAI8052241.1 | ANKYRIN REPEAT FAMILY PROTEIN |
| CAI8052255.1 | SURFACE ANTIGEN BSPA-LIKE-RELATED |
| CAI8052256.1 | MASK PROTEIN |
| CAI8052257.1 | ANKYRIN REPEAT PROTEIN |
| CAI8052259.1 | SESQUIPEDALIAN |
| CAI8052260.1 | SESQUIPEDALIAN |
| CAI8052261.1 | |
| CAI8052258.1 | |
| CAI8052263.1 | |
| CAI8052262.1 | |
| CAI8052264.1 | |
| CAI8052265.1 | |
| CAI8052266.1 | COPINE |
| CAI8052267.1 | COPINE |
| CAI8052268.1 | |
| CAI8052270.1 | SIDEROFLEXIN |
| CAI8052271.1 | SIDEROFLEXIN |
