Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8052371.1 | |
| CAI8052372.1 | |
| CAI8052375.1 | |
| CAI8052374.1 | |
| CAI8052373.1 | |
| CAI8052377.1 | GTP-BINDING PROTEIN ALPHA SUBUNIT |
| CAI8052376.1 | GTP-BINDING PROTEIN ALPHA SUBUNIT |
| CAI8052380.1 | UBIQUITIN-ACTIVATING ENZYME E1 |
| CAI8052379.1 | UBIQUITIN-ACTIVATING ENZYME E1 |
| CAI8052378.1 | UBIQUITIN-ACTIVATING ENZYME E1 |
| CAI8052381.1 | UBIQUITIN-ACTIVATING ENZYME E1 |
| CAI8052382.1 | UBIQUITIN-ACTIVATING ENZYME E1 |
| CAI8052383.1 | |
| CAI8052385.1 | |
| CAI8052384.1 | |
| CAI8052386.1 | |
| CAI8052388.1 | |
| CAI8052387.1 | |
| CAI8052389.1 | |
| CAI8052393.1 | HISTONE DEACETYLASE HDAC1-RELATED |
| CAI8052392.1 | HISTONE DEACETYLASE HDAC1-RELATED |
| CAI8052391.1 | HISTONE DEACETYLASE HDAC1-RELATED |
| CAI8052390.1 | |
| CAI8052394.1 | HISTONE DEACETYLASE HDAC1-RELATED |
| CAI8052395.1 | HISTONE DEACETYLASE HDAC1-RELATED |
| CAI8052396.1 | HISTONE DEACETYLASE HDAC1-RELATED |
| CAI8052398.1 | RIB43A-RELATED |
| CAI8052399.1 | RIB43A-RELATED |
| CAI8052397.1 | RIB43A-RELATED |
| CAI8052403.1 | |
| CAI8052402.1 | |
| CAI8052400.1 | |
| CAI8052401.1 | |
| CAI8052407.1 | COLLAGEN ALPHA |
| CAI8052405.1 | COLLAGEN ALPHA |
| CAI8052404.1 | |
| CAI8052406.1 | COLLAGEN ALPHA |
| CAI8052408.1 | COLLAGEN ALPHA |
| CAI8052412.1 | MYOSIN VII, XV |
| CAI8052411.1 | MYOSIN VII, XV |
| CAI8052410.1 | MYOSIN VII, XV |
| CAI8052409.1 | MYOSIN VII, XV |
| CAI8052413.1 | MYOSIN VII, XV |
| CAI8052414.1 | MYOSIN VII, XV |
| CAI8052416.1 | ATP-DEPENDENT RNA HELICASE DBP3 |
| CAI8052415.1 | ATP-DEPENDENT RNA HELICASE DBP3 |
| CAI8052417.1 | ATP-DEPENDENT RNA HELICASE DBP3 |
| CAI8052418.1 | CYCLINS |
| CAI8052419.1 | AGAP010540-PA |
| CAI8052420.1 | WD40 REPEAT PROTEIN |
