Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8052471.1 | ENOLASE SUPERFAMILY, MANDELATE RACEMASE |
| CAI8052472.1 | 2-KETO-3-DEOXY-L-RHAMNONATE ALDOLASE |
| CAI8052473.1 | HEME A SYNTHASE |
| CAI8052474.1 | PROTOHEME IX FARNESYLTRANSFERASE, MITOCHONDRIAL |
| CAI8052478.1 | HISTONE DEACETYLASE 2-RELATED |
| CAI8052479.1 | HISTONE DEACETYLASE 2-RELATED |
| CAI8052480.1 | |
| CAI8052477.1 | HISTONE DEACETYLASE 2-RELATED |
| CAI8052476.1 | HISTONE DEACETYLASE 2-RELATED |
| CAI8052475.1 | HISTONE DEACETYLASE 2-RELATED |
| CAI8052481.1 | CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED |
| CAI8052484.1 | |
| CAI8052483.1 | TRANSCRIPTION TERMINATION FACTOR 2-RELATED |
| CAI8052482.1 | TRANSCRIPTION TERMINATION FACTOR 2-RELATED |
| CAI8052486.1 | |
| CAI8052487.1 | ACYLPYRUVASE |
| CAI8052485.1 | ACYLPYRUVASE |
| CAI8052488.1 | DNA POLYMERASE TYPE-X FAMILY MEMBER |
| CAI8052489.1 | |
| CAI8052490.1 | MYCBP-ASSOCIATED PROTEIN |
| CAI8052493.1 | MYCBP-ASSOCIATED PROTEIN |
| CAI8052492.1 | MYCBP-ASSOCIATED PROTEIN |
| CAI8052491.1 | MYCBP-ASSOCIATED PROTEIN |
| CAI8052494.1 | |
| CAI8052495.1 | |
| CAI8052497.1 | PHOSPHOLIPASE B-RELATED |
| CAI8052498.1 | PHOSPHOLIPASE B-RELATED |
| CAI8052496.1 | PHOSPHOLIPASE B-RELATED |
| CAI8052499.1 | PHOSPHOLIPASE B-RELATED |
| CAI8052502.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8052501.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8052500.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8052503.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8052504.1 | |
| CAI8052505.1 | |
| CAI8052508.1 | UNCHARACTERIZED |
| CAI8052507.1 | UNCHARACTERIZED |
| CAI8052506.1 | UNCHARACTERIZED |
| CAI8052510.1 | UNCHARACTERIZED |
| CAI8052509.1 | HISTONE-LYSINE N-METHYLTRANSFERASE SUV39H |
| CAI8052515.1 | CELL DIVISION PROTEIN KINASE |
| CAI8052512.1 | CELL DIVISION PROTEIN KINASE |
| CAI8052516.1 | CELL DIVISION PROTEIN KINASE |
| CAI8052513.1 | CELL DIVISION PROTEIN KINASE |
| CAI8052511.1 | CELL DIVISION PROTEIN KINASE |
| CAI8052514.1 | CELL DIVISION PROTEIN KINASE |
| CAI8052517.1 | CDC73 DOMAIN PROTEIN |
| CAI8052518.1 | |
| CAI8052519.1 | BTB/POZ DOMAIN-CONTAINING PROTEIN 9 |
| CAI8052522.1 | BTB/POZ DOMAIN-CONTAINING PROTEIN 9 |
