Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8052621.1 | WD40 REPEAT PROTEIN |
| CAI8052622.1 | WD40 REPEAT PROTEIN |
| CAI8052623.1 | NUDIX HYDROLASE |
| CAI8052624.1 | NUDIX HYDROLASE |
| CAI8052626.1 | |
| CAI8052625.1 | |
| CAI8052629.1 | MAJOR VAULT PROTEIN |
| CAI8052628.1 | MAJOR VAULT PROTEIN |
| CAI8052627.1 | MAJOR VAULT PROTEIN |
| CAI8052631.1 | TRANSCRIPTION INITIATION FACTOR IIH TFIIH , POLYPEPTIDE 3-RELATED |
| CAI8052630.1 | TRANSCRIPTION INITIATION FACTOR IIH TFIIH , POLYPEPTIDE 3-RELATED |
| CAI8052632.1 | TRANSCRIPTION INITIATION FACTOR IIH TFIIH , POLYPEPTIDE 3-RELATED |
| CAI8052633.1 | X-BOX BINDING PROTEIN 1 |
| CAI8052635.1 | |
| CAI8052634.1 | |
| CAI8052636.1 | |
| CAI8052637.1 | N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE |
| CAI8052638.1 | N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE |
| CAI8052640.1 | |
| CAI8052639.1 | |
| CAI8052642.1 | |
| CAI8052641.1 | |
| CAI8052643.1 | |
| CAI8052644.1 | |
| CAI8052645.1 | TRANSCRIPTION INITIATION FACTOR IIH TFIIH , POLYPEPTIDE 3-RELATED |
| CAI8052646.1 | TRANSCRIPTION INITIATION FACTOR IIH TFIIH , POLYPEPTIDE 3-RELATED |
| CAI8052647.1 | |
| CAI8052648.1 | |
| CAI8052649.1 | MAJOR VAULT PROTEIN |
| CAI8052650.1 | MAJOR VAULT PROTEIN |
| CAI8052651.1 | MAJOR VAULT PROTEIN |
| CAI8052654.1 | |
| CAI8052653.1 | |
| CAI8052652.1 | |
| CAI8052655.1 | NUDIX HYDROLASE |
| CAI8052656.1 | NUDIX HYDROLASE |
| CAI8052658.1 | WD40 REPEAT PROTEIN |
| CAI8052657.1 | WD40 REPEAT PROTEIN |
| CAI8052660.1 | WD40 REPEAT PROTEIN |
| CAI8052659.1 | WD40 REPEAT PROTEIN |
| CAI8052661.1 | |
| CAI8052662.1 | |
| CAI8052663.1 | |
| CAI8052664.1 | |
| CAI8052665.1 | |
| CAI8052666.1 | |
| CAI8052667.1 | SERINE INCORPORATOR |
| CAI8052668.1 | DNA2/NAM7 HELICASE FAMILY |
| CAI8052669.1 | |
| CAI8052670.1 | CYTOCHROME C OXIDASE SUBUNIT III |
