Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8052671.1 | CYTOCHROME C OXIDASE SUBUNIT 1 |
| CAI8052672.1 | CYTOCHROME C OXIDASE SUBUNIT 1 |
| CAI8052673.1 | CYTOCHROME C OXIDASE, SUBUNIT II |
| CAI8052674.1 | PROTOHEME IX FARNESYLTRANSFERASE, MITOCHONDRIAL |
| CAI8052675.1 | HEME A SYNTHASE |
| CAI8052676.1 | ABC TRANSPORTER ATP-BINDING PROTEIN |
| CAI8052677.1 | 2-METHYLCITRATE DEHYDRATASE-RELATED |
| CAI8052678.1 | HYDROLASE ALPHA/BETA FOLD FAMILY |
| CAI8052679.1 | 4-CARBOXYMUCONOLACTONE DECARBOXYLASE FAMILY PROTEIN |
| CAI8052680.1 | ALKANESULFONATE MONOOXYGENASE |
| CAI8052681.1 | |
| CAI8052682.1 | SARCOSINE DEHYDROGENASE-RELATED |
| CAI8052683.1 | FERRITIN |
| CAI8052684.1 | RIBD C-TERMINAL DOMAIN CONTAINING PROTEIN |
| CAI8052685.1 | OXIDOREDUCTASE GLYR1-RELATED |
| CAI8052686.1 | CYTIDYLATE KINASE/PANTOATE-BETA-ALANINE LIGASE |
| CAI8052687.1 | CYTIDYLATE KINASE/PANTOATE-BETA-ALANINE LIGASE |
| CAI8052690.1 | ELECTRON TRANSFER FLAVOPROTEIN ALPHA |
| CAI8052689.1 | ELECTRON TRANSFER FLAVOPROTEIN ALPHA |
| CAI8052688.1 | ELECTRON TRANSFER FLAVOPROTEIN ALPHA |
| CAI8052691.1 | METHIONYL-TRNA FORMYLTRANSFERASE |
| CAI8052693.1 | METHIONYL-TRNA FORMYLTRANSFERASE |
| CAI8052692.1 | METHIONYL-TRNA FORMYLTRANSFERASE |
| CAI8052694.1 | METHIONYL-TRNA FORMYLTRANSFERASE |
| CAI8052695.1 | RIBOSOME MATURATION FACTOR RIMM |
| CAI8052696.1 | UVRABC SYSTEM PROTEIN B |
| CAI8052697.1 | |
| CAI8052698.1 | D-GLUTAMATE CYCLASE, MITOCHONDRIAL |
| CAI8052700.1 | D-GLUTAMATE CYCLASE, MITOCHONDRIAL |
| CAI8052699.1 | D-GLUTAMATE CYCLASE, MITOCHONDRIAL |
| CAI8052701.1 | REGULATOR OF RPOS |
| CAI8052702.1 | ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC |
| CAI8052703.1 | ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC |
| CAI8052704.1 | DEGV DOMAIN-CONTAINING PROTEIN DR_1986-RELATED |
| CAI8052705.1 | DEGV DOMAIN-CONTAINING PROTEIN DR_1986-RELATED |
| CAI8052706.1 | DEGV DOMAIN-CONTAINING PROTEIN DR_1986-RELATED |
| CAI8052707.1 | - |
| CAI8052708.1 | - |
| CAI8052709.1 | |
| CAI8052711.1 | FO SYNTHASE (COFH) |
| CAI8052710.1 | FO SYNTHASE (COFH) |
| CAI8052712.1 | FO SYNTHASE (COFH) |
| CAI8052713.1 | FO SYNTHASE (COFH) |
| CAI8052714.1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| CAI8052715.1 | |
| CAI8052716.1 | |
| CAI8052717.1 | ASPARTATE AMINOTRANSFERASE |
| CAI8052718.1 | |
| CAI8052719.1 | ALTERED INHERITANCE OF MITOCHONDRIA PROTEIN 41, MITOCHONDRIAL |
| CAI8052720.1 | PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE SUBUNIT PURQ |
