Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8052571.1 | MEMBRANE ASSOCIATED GUANYLATE KINASE-RELATED |
| CAI8052572.1 | |
| CAI8052573.1 | |
| CAI8052574.1 | TETRATRICOPEPTIDE REPEAT PROTEIN 38 |
| CAI8052575.1 | |
| CAI8052576.1 | ALCOHOL DEHYDROGENASE |
| CAI8052577.1 | DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 7B |
| CAI8052578.1 | IRON-SULFUR CLUSTER ASSEMBLY 2 HOMOLOG, MITOCHONDRIAL |
| CAI8052579.1 | |
| CAI8052580.1 | |
| CAI8052581.1 | |
| CAI8052582.1 | VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM |
| CAI8052583.1 | ZGC:194242 |
| CAI8052588.1 | |
| CAI8052586.1 | |
| CAI8052587.1 | |
| CAI8052585.1 | |
| CAI8052584.1 | |
| CAI8052589.1 | |
| CAI8052590.1 | |
| CAI8052591.1 | ACYL-COA DEHYDROGENASE |
| CAI8052592.1 | DCTP DEAMINASE |
| CAI8052593.1 | DIHYDROFOLATE REDUCTASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_8G06820) |
| CAI8052594.1 | RIBOFLAVIN SYNTHASE ALPHA CHAIN |
| CAI8052595.1 | GTP CYCLOHYDROLASE II-RELATED |
| CAI8052596.1 | GTP CYCLOHYDROLASE II-RELATED |
| CAI8052602.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8052601.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8052600.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8052599.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8052598.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8052597.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8052603.1 | THREONINE-TRNA LIGASE |
| CAI8052604.1 | THREONINE-TRNA LIGASE |
| CAI8052605.1 | THREONINE-TRNA LIGASE |
| CAI8052606.1 | THREONINE-TRNA LIGASE |
| CAI8052607.1 | SPERMATOGENESIS-ASSOCIATED PROTEIN 20 |
| CAI8052608.1 | |
| CAI8052609.1 | ISOCITRATE DEHYDROGENASE [NADP] |
| CAI8052610.1 | L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) |
| CAI8052611.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
| CAI8052612.1 | COB--COM HETERODISULFIDE REDUCTASE SUBUNIT B 1 |
| CAI8052613.1 | SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT |
| CAI8052614.1 | UDP/ADP-SUGAR PYROPHOSPHATASE |
| CAI8052615.1 | NAD KINASE |
| CAI8052616.1 | NADH DEHYDROGENASE |
| CAI8052617.1 | NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 |
| CAI8052618.1 | |
| CAI8052619.1 | UNCHARACTERIZED |
| CAI8052620.1 | MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED |
