Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8051771.1 | |
| CAI8051772.1 | SENTRIN-SPECIFIC PROTEASE |
| CAI8051773.1 | UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER |
| CAI8051774.1 | GLYOXALASE FAMILY PROTEIN |
| CAI8051775.1 | |
| CAI8051776.1 | METHIONYL-TRNA FORMYLTRANSFERASE |
| CAI8051777.1 | METHIONYL-TRNA FORMYLTRANSFERASE |
| CAI8051778.1 | METHIONYL-TRNA FORMYLTRANSFERASE |
| CAI8051779.1 | METHIONYL-TRNA FORMYLTRANSFERASE |
| CAI8051780.1 | PROTEASE HTPX |
| CAI8051784.1 | QUEUINE TRNA-RIBOSYLTRANSFERASE |
| CAI8051783.1 | QUEUINE TRNA-RIBOSYLTRANSFERASE |
| CAI8051782.1 | QUEUINE TRNA-RIBOSYLTRANSFERASE |
| CAI8051781.1 | QUEUINE TRNA-RIBOSYLTRANSFERASE |
| CAI8051785.1 | 3-DEHYDROQUINATE SYNTHASE |
| CAI8051786.1 | SHIKIMATE KINASE |
| CAI8051787.1 | METHYLMALONYL-COA EPIMERASE |
| CAI8051788.1 | PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE |
| CAI8051789.1 | |
| CAI8051790.1 | TRANSCRIPTIONAL REGULATOR, ASNC FAMILY |
| CAI8051791.1 | SIROHEME BIOSYNTHESIS PROTEIN MET8 |
| CAI8051792.1 | GLUTAMYL-TRNA REDUCTASE |
| CAI8051793.1 | PORPHOBILINOGEN DEAMINASE |
| CAI8051794.1 | SIROHEME SYNTHASE-RELATED |
| CAI8051795.1 | DELTA-AMINOLEVULINIC ACID DEHYDRATASE |
| CAI8051796.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
| CAI8051797.1 | |
| CAI8051799.1 | UBIQUITIN-ACTIVATING ENZYME E1 |
| CAI8051798.1 | UBIQUITIN-ACTIVATING ENZYME E1 |
| CAI8051800.1 | UBIQUITIN-ACTIVATING ENZYME E1 |
| CAI8051801.1 | LD44032P |
| CAI8051802.1 | |
| CAI8051803.1 | |
| CAI8051804.1 | |
| CAI8051805.1 | |
| CAI8051806.1 | |
| CAI8051807.1 | |
| CAI8051808.1 | |
| CAI8051809.1 | |
| CAI8051810.1 | |
| CAI8051811.1 | |
| CAI8051813.1 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
| CAI8051812.1 | |
| CAI8051814.1 | NADPH-DEPENDENT 7-CYANO-7-DEAZAGUANINE REDUCTASE |
| CAI8051815.1 | NADPH-DEPENDENT 7-CYANO-7-DEAZAGUANINE REDUCTASE |
| CAI8051816.1 | NADPH-DEPENDENT 7-CYANO-7-DEAZAGUANINE REDUCTASE |
| CAI8051817.1 | NADPH-DEPENDENT 7-CYANO-7-DEAZAGUANINE REDUCTASE |
| CAI8051818.1 | FERREDOXIN-RELATED |
| CAI8051819.1 | GUANYLATE KINASE-RELATED |
| CAI8051821.1 | AROM/DEHYDROQUINATE SYNTHASE |
