Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8051523.1 | 3-ISOPROPYLMALATE DEHYDROGENASE |
| CAI8051522.1 | 3-ISOPROPYLMALATE DEHYDROGENASE |
| CAI8051521.1 | 3-ISOPROPYLMALATE DEHYDROGENASE |
| CAI8051520.1 | |
| CAI8051525.1 | FUMARYLACETOACETATE HYDROLASE DOMAIN-CONTAINING PROTEIN 2A-RELATED |
| CAI8051526.1 | 2-IMINOBUTANOATE/2-IMINOPROPANOATE DEAMINASE RIDA |
| CAI8051527.1 | ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN |
| CAI8051528.1 | NUDIX HYDROLASE, NUDC SUBFAMILY |
| CAI8051529.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8051530.1 | L-ASPARAGINASE |
| CAI8051531.1 | METALLOPROTEASE M41 FTSH |
| CAI8051532.1 | METALLOPROTEASE M41 FTSH |
| CAI8051534.1 | METALLOPROTEASE M41 FTSH |
| CAI8051533.1 | METALLOPROTEASE M41 FTSH |
| CAI8051535.1 | METALLOPROTEASE M41 FTSH |
| CAI8051536.1 | METALLOPROTEASE M41 FTSH |
| CAI8051537.1 | |
| CAI8051538.1 | SACCHAROPINE DEHYDROGENASE |
| CAI8051539.1 | KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG |
| CAI8051540.1 | GLYCOSYLTRANSFERASE |
| CAI8051541.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8051542.1 | |
| CAI8051543.1 | CENTROSOMAL PROTEIN OF 170 KDA |
| CAI8051546.1 | IDURONATE 2-SULFATASE |
| CAI8051545.1 | IDURONATE 2-SULFATASE |
| CAI8051544.1 | IDURONATE 2-SULFATASE |
| CAI8051547.1 | GLUTATHIONE S-TRANSFERASE |
| CAI8051548.1 | GLUTATHIONE S-TRANSFERASE |
| CAI8051549.1 | MALTODEXTRIN IMPORT ATP-BINDING PROTEIN MSMX |
| CAI8051550.1 | MALTODEXTRIN IMPORT ATP-BINDING PROTEIN MSMX |
| CAI8051551.1 | LEUCINE-SPECIFIC-BINDING PROTEIN |
| CAI8051552.1 | HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT SYSTEM PERMEASE |
| CAI8051553.1 | CONSERVED COMPONENT OF ABC TRANSPORTER FOR NATURAL AMINO ACIDS-RELATED |
| CAI8051554.1 | |
| CAI8051555.1 | CYTOKINE RECEPTOR |
| CAI8051556.1 | |
| CAI8051557.1 | NICOTINAMIDE-NUCLEOTIDE AMIDOHYDROLASE PNCC |
| CAI8051558.1 | RHOMBOID PROTEASE |
| CAI8051559.1 | BACTERIAL HEMOLYSIN-LIKE PROTEIN |
| CAI8051560.1 | ENOYL-COA HYDRATASE-RELATED |
| CAI8051561.1 | |
| CAI8051562.1 | |
| CAI8051563.1 | QUEUOSINE PRECURSOR TRANSPORTER-RELATED |
| CAI8051564.1 | EUKARYOTIC TRANSLATION ELONGATION FACTOR 1 EPSILON-1 |
| CAI8051565.1 | |
| CAI8051567.1 | MASK PROTEIN |
| CAI8051568.1 | MASK PROTEIN |
| CAI8051566.1 | ANKYRIN REPEAT FAMILY A |
| CAI8051570.1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
| CAI8051569.1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
