Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8051371.1 | OLIGOPEPTIDE TRANSPORTER-RELATED |
| CAI8051372.1 | OLIGOPEPTIDE TRANSPORTER-RELATED |
| CAI8051373.1 | OLIGOPEPTIDE TRANSPORTER-RELATED |
| CAI8051374.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA49 |
| CAI8051375.1 | CADHERIN-87A |
| CAI8051376.1 | CADHERIN-87A |
| CAI8051377.1 | CADHERIN-87A |
| CAI8051378.1 | PROTEIN CBG05606 |
| CAI8051379.1 | CADHERIN-87A |
| CAI8051380.1 | DESMOGLEIN FAMILY MEMBER |
| CAI8051381.1 | CADHERIN-87A |
| CAI8051382.1 | BASIC LEUCINE ZIPPER NUCLEAR FACTOR 1 BLZF1 PROTEIN |
| CAI8051383.1 | BASIC LEUCINE ZIPPER NUCLEAR FACTOR 1 BLZF1 PROTEIN |
| CAI8051384.1 | BASIC LEUCINE ZIPPER NUCLEAR FACTOR 1 BLZF1 PROTEIN |
| CAI8051385.1 | NUCLEAR TRANSPORT FACTOR 2 |
| CAI8051386.1 | CARBON CATABOLITE REPRESSOR PROTEIN 4 |
| CAI8051387.1 | ZINC FINGER PROTEIN |
| CAI8051388.1 | NUCLEOPORIN P54 |
| CAI8051389.1 | NUCLEOPORIN P54 |
| CAI8051390.1 | |
| CAI8051391.1 | HOMEOBOX PROTEIN ARISTALESS |
| CAI8051392.1 | MULTIPLE MYELOMA TUMOR-ASSOCIATED PROTEIN 2 FAMILY MEMBER |
| CAI8051393.1 | MULTIPLE MYELOMA TUMOR-ASSOCIATED PROTEIN 2 FAMILY MEMBER |
| CAI8051394.1 | |
| CAI8051397.1 | HISTIDYL-TRNA SYNTHETASE |
| CAI8051396.1 | HISTIDYL-TRNA SYNTHETASE |
| CAI8051395.1 | HISTIDYL-TRNA SYNTHETASE |
| CAI8051399.1 | HISTIDYL-TRNA SYNTHETASE |
| CAI8051398.1 | HISTIDYL-TRNA SYNTHETASE |
| CAI8051401.1 | E3 UBIQUITIN-PROTEIN LIGASE MYCBP2 |
| CAI8051400.1 | E3 UBIQUITIN-PROTEIN LIGASE MYCBP2 |
| CAI8051402.1 | E3 UBIQUITIN-PROTEIN LIGASE MYCBP2 |
| CAI8051403.1 | |
| CAI8051404.1 | |
| CAI8051405.1 | |
| CAI8051406.1 | UNCHARACTERIZED |
| CAI8051407.1 | EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN |
| CAI8051410.1 | ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN |
| CAI8051413.1 | ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN |
| CAI8051409.1 | ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN |
| CAI8051411.1 | ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN |
| CAI8051412.1 | ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN |
| CAI8051408.1 | |
| CAI8051414.1 | ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN |
| CAI8051415.1 | ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN |
| CAI8051416.1 | ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN |
| CAI8051417.1 | ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN |
| CAI8051419.1 | ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN |
| CAI8051418.1 | ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN |
| CAI8051421.1 | ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN |
