Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8051221.1 | |
| CAI8051222.1 | |
| CAI8051223.1 | |
| CAI8051224.1 | |
| CAI8051225.1 | NG5 |
| CAI8051227.1 | ACYL-COA SYNTHETASE |
| CAI8051228.1 | ACYL-COA SYNTHETASE |
| CAI8051226.1 | ACYL-COA SYNTHETASE |
| CAI8051231.1 | RIBOSOME BIOGENESIS PROTEIN TSR3 HOMOLOG |
| CAI8051230.1 | RIBOSOME BIOGENESIS PROTEIN TSR3 HOMOLOG |
| CAI8051229.1 | RIBOSOME BIOGENESIS PROTEIN TSR3 HOMOLOG |
| CAI8051232.1 | RIBOSOME BIOGENESIS PROTEIN TSR3 HOMOLOG |
| CAI8051233.1 | RP42 RELATED |
| CAI8051237.1 | MYOCARDIN-RELATED TRANSCRIPTION FACTOR-RELATED |
| CAI8051236.1 | MYOCARDIN-RELATED TRANSCRIPTION FACTOR-RELATED |
| CAI8051235.1 | MYOCARDIN-RELATED TRANSCRIPTION FACTOR-RELATED |
| CAI8051234.1 | MYOCARDIN-RELATED TRANSCRIPTION FACTOR-RELATED |
| CAI8051239.1 | MYOCARDIN-RELATED TRANSCRIPTION FACTOR-RELATED |
| CAI8051238.1 | MYOCARDIN-RELATED TRANSCRIPTION FACTOR-RELATED |
| CAI8051241.1 | |
| CAI8051240.1 | |
| CAI8051244.1 | SYNTAXIN |
| CAI8051243.1 | |
| CAI8051242.1 | |
| CAI8051245.1 | |
| CAI8051249.1 | |
| CAI8051248.1 | |
| CAI8051247.1 | |
| CAI8051246.1 | |
| CAI8051250.1 | EXCISION REPAIR CROSS-COMPLEMENTING 1 ERCC1 |
| CAI8051251.1 | MYELIN PROTEOLIPID |
| CAI8051252.1 | MYELIN PROTEOLIPID |
| CAI8051254.1 | MYELIN PROTEOLIPID |
| CAI8051253.1 | |
| CAI8051257.1 | RIBONUCLEASE P PROTEIN SUBUNIT P20 |
| CAI8051255.1 | RIBONUCLEASE P PROTEIN SUBUNIT P20 |
| CAI8051256.1 | RIBONUCLEASE P PROTEIN SUBUNIT P20 |
| CAI8051258.1 | RIBONUCLEASE P PROTEIN SUBUNIT P20 |
| CAI8051259.1 | |
| CAI8051260.1 | |
| CAI8051261.1 | ACETYLGLUCOSAMINYLTRANSFERASE |
| CAI8051262.1 | |
| CAI8051264.1 | EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED |
| CAI8051265.1 | RIBOSOMAL PROTEIN L23-RELATED |
| CAI8051263.1 | NADPH NITROREDUCTASE |
| CAI8051266.1 | |
| CAI8051267.1 | |
| CAI8051268.1 | |
| CAI8051269.1 | - |
| CAI8051270.1 | DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER |
