Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8051121.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8051122.1 | |
| CAI8051123.1 | |
| CAI8051124.1 | |
| CAI8051125.1 | |
| CAI8051126.1 | 3-HYDROXYISOBUTYRATE DEHYDROGENASE-RELATED |
| CAI8051127.1 | 4-CARBOXYMUCONOLACTONE DECARBOXYLASE FAMILY PROTEIN |
| CAI8051128.1 | ADENINE PHOSPHORIBOSYLTRANSFERASE |
| CAI8051129.1 | ELONGATION FACTOR TU-RELATED |
| CAI8051130.1 | ELONGATION FACTOR TU-RELATED |
| CAI8051131.1 | ELONGATION FACTOR TU-RELATED |
| CAI8051132.1 | ELONGATION FACTOR TU-RELATED |
| CAI8051133.1 | RHO-INTERACTING TRANSCRIPTION TERMINATION FACTOR NUSG |
| CAI8051134.1 | 60S RIBOSOMAL PROTEIN L12 |
| CAI8051135.1 | 54S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL |
| CAI8051136.1 | 39S RIBOSOMAL PROTEIN L10, MITOCHONDRIAL |
| CAI8051137.1 | 39S RIBOSOMAL PROTEIN L12 |
| CAI8051138.1 | |
| CAI8051139.1 | BLR8190 PROTEIN |
| CAI8051140.1 | SULFOQUINOVOSYL TRANSFERASE SQD2 |
| CAI8051141.1 | CYSTATHIONINE BETA-SYNTHASE |
| CAI8051145.1 | |
| CAI8051144.1 | |
| CAI8051143.1 | |
| CAI8051142.1 | |
| CAI8051146.1 | |
| CAI8051147.1 | |
| CAI8051148.1 | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 |
| CAI8051150.1 | SERINE HYDROXYMETHYLTRANSFERASE |
| CAI8051149.1 | SERINE HYDROXYMETHYLTRANSFERASE |
| CAI8051151.1 | ANKYRIN REPEAT CONTAINING |
| CAI8051153.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI8051152.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI8051154.1 | |
| CAI8051156.1 | INACTIVE HYDROXYSTEROID DEHYDROGENASE-LIKE PROTEIN 1 |
| CAI8051155.1 | |
| CAI8051157.1 | INACTIVE HYDROXYSTEROID DEHYDROGENASE-LIKE PROTEIN 1 |
| CAI8051159.1 | |
| CAI8051158.1 | RH59310P |
| CAI8051160.1 | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.8 KDA PROTEIN |
| CAI8051161.1 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
| CAI8051162.1 | NADH-UBIQUINONE OXIDOREDUCTASE MWFE SUBUNIT |
| CAI8051167.1 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
| CAI8051166.1 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
| CAI8051165.1 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
| CAI8051164.1 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
| CAI8051163.1 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
| CAI8051168.1 | SODIUM/HYDROGEN EXCHANGER |
| CAI8051169.1 | SODIUM/HYDROGEN EXCHANGER |
| CAI8051172.1 | - |
