Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8050820.1 | GLUTAMINE SYNTHETASE |
| CAI8050822.1 | GLUTAMINE SYNTHETASE |
| CAI8050823.1 | GLUTAMINE SYNTHETASE |
| CAI8050826.1 | CHAPERONIN |
| CAI8050825.1 | CHAPERONIN |
| CAI8050824.1 | CHAPERONIN |
| CAI8050828.1 | SERINE HYDROXYMETHYLTRANSFERASE |
| CAI8050827.1 | SERINE HYDROXYMETHYLTRANSFERASE |
| CAI8050830.1 | SERINE HYDROXYMETHYLTRANSFERASE |
| CAI8050829.1 | SERINE HYDROXYMETHYLTRANSFERASE |
| CAI8050831.1 | SERINE HYDROXYMETHYLTRANSFERASE |
| CAI8050832.1 | DNA POLYMERASE II LARGE SUBUNIT |
| CAI8050833.1 | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H |
| CAI8050834.1 | CELL DIVISION CONTROL PROTEIN 6-RELATED |
| CAI8050836.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
| CAI8050835.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
| CAI8050838.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
| CAI8050837.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
| CAI8050839.1 | AAA-FAMILY ATPASE |
| CAI8050840.1 | FERRITIN |
| CAI8050841.1 | TRANSCRIPTION INITIATION FACTOR IIB-RELATED |
| CAI8050842.1 | ASPARTATE KINASE |
| CAI8050843.1 | PROLIFERATING CELL NUCLEAR ANTIGEN |
| CAI8050844.1 | |
| CAI8050845.1 | PHOSPHATIDYLINOSITOL PHOSPHATASE |
| CAI8050846.1 | PYRUVATE FORMATE-LYASE-ACTIVATING ENZYME |
| CAI8050847.1 | 4-PHOSPHOPANTOATE--BETA-ALANINE LIGASE |
| CAI8050848.1 | 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE |
| CAI8050849.1 | 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE |
| CAI8050850.1 | 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE |
| CAI8050851.1 | 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE |
| CAI8050852.1 | HOMO-OLIGOMERIC FLAVIN CONTAINING CYS DECARBOXYLASE FAMILY |
| CAI8050853.1 | TRNA 5-METHYLAMINOMETHYL-2-THIOURIDYLATE -METHYLTRANSFERASE |
| CAI8050854.1 | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER |
| CAI8050855.1 | METALLOPROTEASE TLDD |
| CAI8050856.1 | GLYCEROL DEHYDROGENASE |
| CAI8050857.1 | GLYCEROL DEHYDROGENASE |
| CAI8050858.1 | GLYCEROL DEHYDROGENASE |
| CAI8050859.1 | RNA 3' TERMINAL PHOSPHATE CYCLASE |
| CAI8050860.1 | NADPH NITROREDUCTASE |
| CAI8050862.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
| CAI8050861.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
| CAI8050863.1 | |
| CAI8050864.1 | |
| CAI8050866.1 | TYROSINE-TRNA LIGASE |
| CAI8050865.1 | TYROSINE-TRNA LIGASE |
| CAI8050868.1 | TYROSINE-TRNA LIGASE |
| CAI8050867.1 | TYROSINE-TRNA LIGASE |
| CAI8050869.1 | TYROSINE-TRNA LIGASE |
| CAI8050870.1 | COBALT-FACTOR III C(17)-METHYLTRANSFERASE-RELATED |
