Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8050724.1 | ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED |
| CAI8050722.1 | POTE ANKYRIN DOMAIN |
| CAI8050721.1 | ANKYRIN REPEAT PROTEIN |
| CAI8050720.1 | ANKYRIN REPEAT PROTEIN |
| CAI8050725.1 | |
| CAI8050727.1 | |
| CAI8050726.1 | |
| CAI8050728.1 | |
| CAI8050730.1 | ADAPTIN, ALPHA/GAMMA/EPSILON |
| CAI8050731.1 | ADAPTIN, ALPHA/GAMMA/EPSILON |
| CAI8050729.1 | |
| CAI8050732.1 | ADAPTIN, ALPHA/GAMMA/EPSILON |
| CAI8050733.1 | ADAPTIN, ALPHA/GAMMA/EPSILON |
| CAI8050734.1 | ADAPTIN, ALPHA/GAMMA/EPSILON |
| CAI8050735.1 | ADAPTIN, ALPHA/GAMMA/EPSILON |
| CAI8050736.1 | |
| CAI8050737.1 | |
| CAI8050738.1 | |
| CAI8050739.1 | GH01354P |
| CAI8050740.1 | GH01354P |
| CAI8050741.1 | GH01354P |
| CAI8050742.1 | GH01354P |
| CAI8050743.1 | GH01354P |
| CAI8050745.1 | SMALL NUCLEAR RIBONUCLEOPROTEIN |
| CAI8050744.1 | |
| CAI8050746.1 | SMALL NUCLEAR RIBONUCLEOPROTEIN |
| CAI8050747.1 | |
| CAI8050748.1 | SLL0310 PROTEIN |
| CAI8050749.1 | |
| CAI8050750.1 | PYRUVATE KINASE |
| CAI8050753.1 | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED |
| CAI8050754.1 | |
| CAI8050752.1 | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED |
| CAI8050751.1 | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED |
| CAI8050755.1 | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED |
| CAI8050756.1 | |
| CAI8050758.1 | PHOSPHOSERINE AMINOTRANSFERASE |
| CAI8050757.1 | PHOSPHOSERINE AMINOTRANSFERASE |
| CAI8050759.1 | PHOSPHOSERINE AMINOTRANSFERASE |
| CAI8050760.1 | PHOSPHOSERINE AMINOTRANSFERASE |
| CAI8050763.1 | ACIDIC LEUCINE-RICH NUCLEAR PHOSPHOPROTEIN 32 |
| CAI8050762.1 | ACIDIC LEUCINE-RICH NUCLEAR PHOSPHOPROTEIN 32 |
| CAI8050761.1 | ACIDIC LEUCINE-RICH NUCLEAR PHOSPHOPROTEIN 32 |
| CAI8050764.1 | |
| CAI8050765.1 | GTP-BINDING PROTEIN ALPHA SUBUNIT |
| CAI8050767.1 | |
| CAI8050766.1 | |
| CAI8050768.1 | |
| CAI8050769.1 | |
| CAI8050770.1 | GTP CYCLOHYDROLASE I |
