Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8050874.1 | IMPORT ATP-BINDING PROTEIN |
| CAI8050873.1 | LIPOPROTEIN-RELEASING SYSTEM ATP-BINDING PROTEIN LOLD |
| CAI8050872.1 | IMPORT ATP-BINDING PROTEIN |
| CAI8050871.1 | IMPORT ATP-BINDING PROTEIN |
| CAI8050875.1 | LEUCINE-RESPONSIVE REGULATORY PROTEIN |
| CAI8050876.1 | URIDYLATE KINASE |
| CAI8050877.1 | URIDYLATE KINASE |
| CAI8050878.1 | |
| CAI8050879.1 | NEP1/MRA1 |
| CAI8050880.1 | VITAMIN B12-DEPENDENT RIBONUCLEOTIDE REDUCTASE |
| CAI8050881.1 | ACETYL-COA C-ACETYLTRANSFERASE |
| CAI8050882.1 | BLL1555 PROTEIN |
| CAI8050883.1 | |
| CAI8050884.1 | ARGINASE/AGMATINASE |
| CAI8050885.1 | |
| CAI8050886.1 | CHAPERONIN |
| CAI8050887.1 | ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL |
| CAI8050888.1 | ASPARTATE CARBAMOYLTRANSFERASE REGULATORY CHAIN |
| CAI8050889.1 | |
| CAI8050894.1 | V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A |
| CAI8050893.1 | V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A |
| CAI8050892.1 | V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A |
| CAI8050891.1 | V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A |
| CAI8050890.1 | V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A |
| CAI8050896.1 | AMMONIUM TRANSPORTER MEP2 |
| CAI8050895.1 | AMMONIUM TRANSPORTER MEP2 |
| CAI8050897.1 | ASPARTATE-SEMIALDEHYDE DEHYDROGENASE |
| CAI8050898.1 | ASPARTATE-SEMIALDEHYDE DEHYDROGENASE |
| CAI8050899.1 | ASPARTATE-SEMIALDEHYDE DEHYDROGENASE |
| CAI8050900.1 | PROTOHEME IX FARNESYLTRANSFERASE, MITOCHONDRIAL |
| CAI8050901.1 | PROTOHEME IX FARNESYLTRANSFERASE, MITOCHONDRIAL |
| CAI8050902.1 | |
| CAI8050904.1 | |
| CAI8050903.1 | |
| CAI8050905.1 | TRNA (CYTIDINE(56)-2'-O)-METHYLTRANSFERASE |
| CAI8050906.1 | TRNA (CYTIDINE(56)-2'-O)-METHYLTRANSFERASE |
| CAI8050907.1 | TRNA (CYTIDINE(56)-2'-O)-METHYLTRANSFERASE |
| CAI8050908.1 | |
| CAI8050909.1 | 6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE DMRL SYNTHASE LUMAZINE SYNTHASE |
| CAI8050910.1 | |
| CAI8050911.1 | SEQUESTOSOME 1-RELATED |
| CAI8050912.1 | |
| CAI8050913.1 | |
| CAI8050914.1 | |
| CAI8050915.1 | SEPTIN |
| CAI8050916.1 | SEPTIN |
| CAI8050917.1 | SEPTIN |
| CAI8050918.1 | STEROL REGULATORY ELEMENT-BINDING PROTEIN |
| CAI8050919.1 | STEROL REGULATORY ELEMENT-BINDING PROTEIN |
| CAI8050920.1 |
